Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3778

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
43,580	+		GFF3777	0.16	+0.8
43,720	+		GFF3777	0.32	-2.7
43,721	-		GFF3777	0.32	+0.8
43,890	+		GFF3777	0.52	+0.1
44,303	-				-0.1
44,356	-				+0.2
44,360	-				-0.7
44,379	-				-0.4
44,382	+				-0.0
44,382	+				-0.4
44,383	-				+0.1
44,413	-				+0.1
44,758	+		GFF3778	0.18	-0.0
44,900	+		GFF3778	0.28	-0.2
44,997	+		GFF3778	0.34	+0.4
45,430	-		GFF3778	0.64	-0.2
45,443	-		GFF3778	0.65	+0.6
45,463	+		GFF3778	0.66	+0.4
45,464	-		GFF3778	0.66	+0.3
45,706	+		GFF3778	0.82	+0.3
45,786	+		GFF3778	0.88	-0.3
45,802	+		GFF3778	0.89	+0.1
45,802	+		GFF3778	0.89	+0.1
45,854	-				-0.4
45,861	+				+0.7
45,902	+				-0.7
45,970	-				+0.2
45,997	-				+0.1
45,997	-				-0.7
46,208	+				-0.6
46,250	+				+0.5
46,286	+				-0.6
46,348	-				+0.4
46,458	+				+0.0
46,459	-				+0.3
46,578	+		GFF3779	0.12	-0.0
46,579	-		GFF3779	0.12	+0.3
46,633	-		GFF3779	0.15	+0.7
46,705	-		GFF3779	0.18	-0.1
46,858	+		GFF3779	0.26	+0.5