Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3661

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
8,119	+		GFF3660	0.62	-0.6
8,139	+		GFF3660	0.63	-0.6
8,201	-		GFF3660	0.66	-0.2
8,228	+		GFF3660	0.67	-0.7
8,262	-		GFF3660	0.69	-0.2
8,344	-		GFF3660	0.72	-1.1
8,375	+		GFF3660	0.74	+0.3
8,417	-		GFF3660	0.75	+0.2
8,417	-		GFF3660	0.75	-0.1
8,462	-		GFF3660	0.77	-1.2
8,619	+		GFF3660	0.84	-0.7
8,955	+				-0.6
8,980	+				-1.3
8,981	-				-0.3
8,981	-				-1.0
8,987	+				-0.3
8,988	-				-0.6
8,995	+				-0.7
8,995	+				+0.4
8,996	-				-0.1
8,996	-				-0.3
9,013	-				-0.7
9,064	-				-0.3
9,064	-				+0.9
9,076	-				-1.3
9,109	+				-0.8
9,231	-		GFF3661	0.24	+0.2
9,349	-		GFF3661	0.38	+0.2
9,413	-		GFF3661	0.46	-0.0
9,481	+		GFF3661	0.54	-0.5
9,482	-		GFF3661	0.54	-0.6
9,484	-		GFF3661	0.55	+0.4
9,543	+		GFF3661	0.62	-1.1
9,593	-		GFF3661	0.68	-2.4
9,593	-		GFF3661	0.68	+0.3
9,603	-		GFF3661	0.69	-0.1
9,943	+				-0.9
10,253	-				-0.4
10,254	+				+0.3
10,283	-				+0.4
10,338	+				-0.3
10,490	+		GFF3662	0.11	-0.5
10,553	+		GFF3662	0.14	+0.9
10,572	+		GFF3662	0.15	-0.1
10,649	-		GFF3662	0.20	-0.2
10,680	+		GFF3662	0.22	+0.2
10,680	+		GFF3662	0.22	+1.9
10,680	+		GFF3662	0.22	-0.2
10,791	+		GFF3662	0.28	-0.0