Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3568 and GFF3569 are separated by 21 nucleotides GFF3569 and GFF3570 are separated by 58 nucleotides GFF3570 and GFF3571 are separated by 11 nucleotides
GFF3568 - Amino acid transporter, at 323,793 to 325,136
GFF3568
GFF3569 - Proline iminopeptidase (EC 3.4.11.5), at 325,158 to 326,051
GFF3569
GFF3570 - FIG074102: hypothetical protein, at 326,110 to 326,847
GFF3570
GFF3571 - Ribokinase (EC 2.7.1.15), at 326,859 to 328,085
GFF3571
Position (kb) 325
326
327 Strain fitness (log2 ratio) -1
0
1 at 324.161 kb on + strand, within GFF3568 at 324.255 kb on - strand, within GFF3568 at 324.255 kb on - strand, within GFF3568 at 324.419 kb on + strand, within GFF3568 at 324.422 kb on + strand, within GFF3568 at 324.422 kb on + strand, within GFF3568 at 324.506 kb on + strand, within GFF3568 at 324.506 kb on + strand, within GFF3568 at 324.506 kb on + strand, within GFF3568 at 324.507 kb on - strand, within GFF3568 at 324.654 kb on + strand, within GFF3568 at 324.752 kb on + strand, within GFF3568 at 324.917 kb on - strand, within GFF3568 at 324.944 kb on + strand, within GFF3568 at 324.945 kb on - strand, within GFF3568 at 324.959 kb on + strand, within GFF3568 at 324.959 kb on + strand, within GFF3568 at 324.960 kb on - strand, within GFF3568 at 324.960 kb on - strand, within GFF3568 at 324.960 kb on - strand, within GFF3568 at 325.080 kb on - strand at 325.345 kb on - strand, within GFF3569 at 325.560 kb on - strand, within GFF3569 at 325.689 kb on + strand, within GFF3569 at 326.153 kb on + strand at 326.313 kb on - strand, within GFF3570
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 324,161 + GFF3568 0.27 -0.5 324,255 - GFF3568 0.34 +0.2 324,255 - GFF3568 0.34 +0.1 324,419 + GFF3568 0.47 -0.0 324,422 + GFF3568 0.47 +0.2 324,422 + GFF3568 0.47 -0.1 324,506 + GFF3568 0.53 -0.0 324,506 + GFF3568 0.53 +0.4 324,506 + GFF3568 0.53 +0.4 324,507 - GFF3568 0.53 +0.1 324,654 + GFF3568 0.64 -0.2 324,752 + GFF3568 0.71 -0.0 324,917 - GFF3568 0.84 -0.2 324,944 + GFF3568 0.86 -0.1 324,945 - GFF3568 0.86 -0.9 324,959 + GFF3568 0.87 +0.3 324,959 + GFF3568 0.87 +0.5 324,960 - GFF3568 0.87 +0.3 324,960 - GFF3568 0.87 -0.5 324,960 - GFF3568 0.87 +0.1 325,080 - -0.7 325,345 - GFF3569 0.21 -0.8 325,560 - GFF3569 0.45 -0.4 325,689 + GFF3569 0.59 +0.2 326,153 + +0.6 326,313 - GFF3570 0.28 -0.0
Or see this region's nucleotide sequence