Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3567 and GFF3568 are separated by 401 nucleotides GFF3568 and GFF3569 are separated by 21 nucleotides GFF3569 and GFF3570 are separated by 58 nucleotides
GFF3567 - Pyruvate kinase (EC 2.7.1.40), at 321,979 to 323,391
GFF3567
GFF3568 - Amino acid transporter, at 323,793 to 325,136
GFF3568
GFF3569 - Proline iminopeptidase (EC 3.4.11.5), at 325,158 to 326,051
GFF3569
GFF3570 - FIG074102: hypothetical protein, at 326,110 to 326,847
GFF3570
Position (kb) 323
324
325
326 Strain fitness (log2 ratio) -1
0
1 at 322.959 kb on + strand, within GFF3567 at 322.972 kb on - strand, within GFF3567 at 323.063 kb on + strand, within GFF3567 at 323.063 kb on + strand, within GFF3567 at 323.193 kb on + strand, within GFF3567 at 323.367 kb on + strand at 323.368 kb on - strand at 323.460 kb on - strand at 323.474 kb on - strand at 323.474 kb on - strand at 323.500 kb on + strand at 323.500 kb on + strand at 323.501 kb on - strand at 323.585 kb on - strand at 323.630 kb on + strand at 323.631 kb on - strand at 323.707 kb on + strand at 323.711 kb on - strand at 323.711 kb on - strand at 323.899 kb on - strand at 324.080 kb on + strand, within GFF3568 at 324.161 kb on + strand, within GFF3568 at 324.255 kb on - strand, within GFF3568 at 324.255 kb on - strand, within GFF3568 at 324.419 kb on + strand, within GFF3568 at 324.422 kb on + strand, within GFF3568 at 324.422 kb on + strand, within GFF3568 at 324.506 kb on + strand, within GFF3568 at 324.506 kb on + strand, within GFF3568 at 324.506 kb on + strand, within GFF3568 at 324.507 kb on - strand, within GFF3568 at 324.654 kb on + strand, within GFF3568 at 324.752 kb on + strand, within GFF3568 at 324.917 kb on - strand, within GFF3568 at 324.944 kb on + strand, within GFF3568 at 324.945 kb on - strand, within GFF3568 at 324.959 kb on + strand, within GFF3568 at 324.959 kb on + strand, within GFF3568 at 324.960 kb on - strand, within GFF3568 at 324.960 kb on - strand, within GFF3568 at 324.960 kb on - strand, within GFF3568 at 325.080 kb on - strand at 325.345 kb on - strand, within GFF3569 at 325.560 kb on - strand, within GFF3569 at 325.689 kb on + strand, within GFF3569
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 322,959 + GFF3567 0.69 -0.2 322,972 - GFF3567 0.70 -0.0 323,063 + GFF3567 0.77 +0.3 323,063 + GFF3567 0.77 -0.2 323,193 + GFF3567 0.86 +0.1 323,367 + +0.3 323,368 - -0.8 323,460 - +0.1 323,474 - +0.8 323,474 - +0.2 323,500 + -0.5 323,500 + +0.9 323,501 - -1.0 323,585 - +0.7 323,630 + +0.0 323,631 - +0.5 323,707 + +0.7 323,711 - -0.0 323,711 - -0.2 323,899 - +0.9 324,080 + GFF3568 0.21 -1.7 324,161 + GFF3568 0.27 -0.5 324,255 - GFF3568 0.34 +0.2 324,255 - GFF3568 0.34 +0.1 324,419 + GFF3568 0.47 -0.0 324,422 + GFF3568 0.47 +0.2 324,422 + GFF3568 0.47 -0.1 324,506 + GFF3568 0.53 -0.0 324,506 + GFF3568 0.53 +0.4 324,506 + GFF3568 0.53 +0.4 324,507 - GFF3568 0.53 +0.1 324,654 + GFF3568 0.64 -0.2 324,752 + GFF3568 0.71 -0.0 324,917 - GFF3568 0.84 -0.2 324,944 + GFF3568 0.86 -0.1 324,945 - GFF3568 0.86 -0.9 324,959 + GFF3568 0.87 +0.3 324,959 + GFF3568 0.87 +0.5 324,960 - GFF3568 0.87 +0.3 324,960 - GFF3568 0.87 -0.5 324,960 - GFF3568 0.87 +0.1 325,080 - -0.7 325,345 - GFF3569 0.21 -0.8 325,560 - GFF3569 0.45 -0.4 325,689 + GFF3569 0.59 +0.2
Or see this region's nucleotide sequence