Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3544

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
295,607	+				-0.3
295,647	-				+0.8
295,747	-		GFF3543	0.15	-1.3
295,747	-		GFF3543	0.15	-0.2
295,747	-		GFF3543	0.15	-0.2
295,747	-		GFF3543	0.15	-0.2
295,820	+		GFF3543	0.23	-0.7
295,903	-		GFF3543	0.32	-0.2
296,037	+		GFF3543	0.46	+0.3
296,038	-		GFF3543	0.46	+0.4
296,039	+		GFF3543	0.46	-0.7
296,039	+		GFF3543	0.46	-0.7
296,064	+		GFF3543	0.49	-0.3
296,272	-		GFF3543	0.71	-0.8
296,387	-		GFF3543	0.83	+0.3
296,387	-		GFF3543	0.83	-1.4
296,387	-		GFF3543	0.83	+0.6
296,500	+				+0.5
296,899	+		GFF3544	0.44	+0.8
297,280	-				-0.2
297,307	-				+0.2
298,064	-		GFF3545	0.31	-0.2