Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF342 and GFF343 are separated by 111 nucleotides GFF343 and GFF344 are separated by 186 nucleotides GFF344 and GFF345 overlap by 1 nucleotides
GFF342 - FIG01046502: hypothetical protein, at 60,023 to 60,196
GFF342
GFF343 - Putative DNA-binding protein in cluster with Type I restriction-modification system, at 60,308 to 61,345
GFF343
GFF344 - FIG01046146: hypothetical protein, at 61,532 to 61,879
GFF344
GFF345 - ATP binding protein, at 61,879 to 63,069
GFF345
Position (kb) 60
61
62 Strain fitness (log2 ratio) -1
0
1 at 59.479 kb on - strand at 59.578 kb on - strand at 59.831 kb on + strand at 59.924 kb on + strand at 60.054 kb on + strand, within GFF342 at 60.260 kb on + strand at 60.404 kb on - strand at 60.406 kb on - strand at 60.578 kb on + strand, within GFF343 at 60.579 kb on - strand, within GFF343 at 60.644 kb on - strand, within GFF343 at 60.644 kb on - strand, within GFF343 at 60.663 kb on + strand, within GFF343 at 60.728 kb on - strand, within GFF343 at 60.804 kb on + strand, within GFF343 at 61.088 kb on + strand, within GFF343 at 61.118 kb on + strand, within GFF343 at 61.119 kb on - strand, within GFF343 at 61.164 kb on + strand, within GFF343 at 61.165 kb on - strand, within GFF343 at 61.174 kb on + strand, within GFF343 at 61.174 kb on + strand, within GFF343 at 61.174 kb on + strand, within GFF343 at 61.175 kb on - strand, within GFF343 at 61.186 kb on + strand, within GFF343 at 61.333 kb on - strand at 61.360 kb on + strand at 61.361 kb on - strand at 61.391 kb on + strand at 61.420 kb on - strand at 61.483 kb on + strand at 61.555 kb on + strand at 61.556 kb on - strand at 61.664 kb on + strand, within GFF344 at 61.665 kb on - strand, within GFF344 at 61.665 kb on - strand, within GFF344 at 61.771 kb on - strand, within GFF344 at 61.892 kb on + strand at 61.893 kb on - strand at 61.900 kb on + strand at 61.900 kb on + strand at 61.914 kb on + strand at 61.915 kb on - strand at 61.947 kb on + strand at 62.020 kb on - strand, within GFF345 at 62.028 kb on + strand, within GFF345 at 62.068 kb on - strand, within GFF345 at 62.101 kb on - strand, within GFF345
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 59,479 - +0.3 59,578 - +0.1 59,831 + -0.2 59,924 + +0.4 60,054 + GFF342 0.18 -0.3 60,260 + -1.0 60,404 - -0.1 60,406 - +0.1 60,578 + GFF343 0.26 -0.5 60,579 - GFF343 0.26 -0.0 60,644 - GFF343 0.32 -0.8 60,644 - GFF343 0.32 +0.1 60,663 + GFF343 0.34 +0.6 60,728 - GFF343 0.40 +0.2 60,804 + GFF343 0.48 -0.6 61,088 + GFF343 0.75 +0.3 61,118 + GFF343 0.78 +0.3 61,119 - GFF343 0.78 -0.1 61,164 + GFF343 0.82 +0.1 61,165 - GFF343 0.83 -1.1 61,174 + GFF343 0.83 -0.0 61,174 + GFF343 0.83 +0.4 61,174 + GFF343 0.83 -0.7 61,175 - GFF343 0.84 -1.4 61,186 + GFF343 0.85 -0.8 61,333 - -0.3 61,360 + -0.7 61,361 - +0.4 61,391 + -1.0 61,420 - -0.0 61,483 + -0.1 61,555 + +0.4 61,556 - -0.1 61,664 + GFF344 0.38 -0.1 61,665 - GFF344 0.38 +0.3 61,665 - GFF344 0.38 -0.2 61,771 - GFF344 0.69 -1.0 61,892 + +0.4 61,893 - -0.9 61,900 + -0.3 61,900 + -1.3 61,914 + -0.8 61,915 - -0.4 61,947 + +0.7 62,020 - GFF345 0.12 +0.3 62,028 + GFF345 0.13 -0.0 62,068 - GFF345 0.16 +0.5 62,101 - GFF345 0.19 -0.4
Or see this region's nucleotide sequence