Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3411 and GFF3412 are separated by 3 nucleotides GFF3412 and GFF3413 are separated by 39 nucleotides
GFF3411 - Tripeptide aminopeptidase (EC 3.4.11.4), at 175,469 to 176,698
GFF3411
GFF3412 - FIG00638667: hypothetical protein, at 176,702 to 178,036
GFF3412
GFF3413 - FIG002776: hypothetical protein, at 178,076 to 179,197
GFF3413
Position (kb) 176
177
178
179 Strain fitness (log2 ratio) -2
-1
0
1
2 at 175.776 kb on + strand, within GFF3411 at 176.046 kb on - strand, within GFF3411 at 176.047 kb on + strand, within GFF3411 at 176.048 kb on - strand, within GFF3411 at 176.048 kb on - strand, within GFF3411 at 176.048 kb on - strand, within GFF3411 at 176.048 kb on - strand, within GFF3411 at 176.129 kb on - strand, within GFF3411 at 176.297 kb on + strand, within GFF3411 at 176.397 kb on - strand, within GFF3411 at 176.397 kb on - strand, within GFF3411 at 176.397 kb on - strand, within GFF3411 at 176.423 kb on + strand, within GFF3411 at 176.504 kb on - strand, within GFF3411 at 176.596 kb on + strand at 176.596 kb on + strand at 176.596 kb on + strand at 176.597 kb on - strand at 176.597 kb on - strand at 176.600 kb on + strand at 176.608 kb on + strand at 176.707 kb on - strand at 176.736 kb on - strand at 176.911 kb on - strand, within GFF3412 at 176.932 kb on - strand, within GFF3412 at 176.948 kb on + strand, within GFF3412 at 177.076 kb on + strand, within GFF3412 at 177.102 kb on + strand, within GFF3412 at 177.102 kb on + strand, within GFF3412 at 177.108 kb on - strand, within GFF3412 at 177.216 kb on - strand, within GFF3412 at 177.257 kb on + strand, within GFF3412 at 177.295 kb on + strand, within GFF3412 at 177.383 kb on - strand, within GFF3412 at 177.433 kb on + strand, within GFF3412 at 177.434 kb on - strand, within GFF3412 at 177.573 kb on - strand, within GFF3412 at 177.575 kb on - strand, within GFF3412 at 177.611 kb on + strand, within GFF3412 at 177.645 kb on + strand, within GFF3412 at 177.657 kb on + strand, within GFF3412 at 177.728 kb on - strand, within GFF3412 at 177.846 kb on + strand, within GFF3412 at 177.977 kb on + strand at 177.997 kb on + strand at 178.181 kb on - strand at 178.181 kb on - strand at 178.289 kb on + strand, within GFF3413 at 178.441 kb on + strand, within GFF3413 at 178.441 kb on + strand, within GFF3413 at 178.442 kb on - strand, within GFF3413 at 178.454 kb on - strand, within GFF3413 at 178.515 kb on + strand, within GFF3413 at 178.518 kb on + strand, within GFF3413 at 178.519 kb on - strand, within GFF3413 at 178.519 kb on - strand, within GFF3413 at 178.523 kb on - strand, within GFF3413 at 178.523 kb on - strand, within GFF3413 at 178.629 kb on + strand, within GFF3413 at 178.799 kb on - strand, within GFF3413 at 178.802 kb on - strand, within GFF3413 at 178.877 kb on - strand, within GFF3413
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 175,776 + GFF3411 0.25 +0.5 176,046 - GFF3411 0.47 +2.0 176,047 + GFF3411 0.47 +0.4 176,048 - GFF3411 0.47 -0.2 176,048 - GFF3411 0.47 +0.8 176,048 - GFF3411 0.47 +1.2 176,048 - GFF3411 0.47 -0.1 176,129 - GFF3411 0.54 -0.3 176,297 + GFF3411 0.67 -0.0 176,397 - GFF3411 0.75 +0.3 176,397 - GFF3411 0.75 +0.7 176,397 - GFF3411 0.75 +1.2 176,423 + GFF3411 0.78 +0.0 176,504 - GFF3411 0.84 +0.4 176,596 + -0.2 176,596 + +0.0 176,596 + -1.0 176,597 - -0.7 176,597 - -0.3 176,600 + -0.7 176,608 + +0.5 176,707 - -0.0 176,736 - +0.2 176,911 - GFF3412 0.16 +0.1 176,932 - GFF3412 0.17 +0.2 176,948 + GFF3412 0.18 +0.2 177,076 + GFF3412 0.28 -2.0 177,102 + GFF3412 0.30 +0.1 177,102 + GFF3412 0.30 -0.8 177,108 - GFF3412 0.30 -0.1 177,216 - GFF3412 0.39 -0.1 177,257 + GFF3412 0.42 -1.0 177,295 + GFF3412 0.44 +0.1 177,383 - GFF3412 0.51 +0.1 177,433 + GFF3412 0.55 -0.5 177,434 - GFF3412 0.55 +0.3 177,573 - GFF3412 0.65 +0.2 177,575 - GFF3412 0.65 -0.7 177,611 + GFF3412 0.68 +1.4 177,645 + GFF3412 0.71 -0.4 177,657 + GFF3412 0.72 +0.2 177,728 - GFF3412 0.77 +0.4 177,846 + GFF3412 0.86 +0.3 177,977 + +0.1 177,997 + -0.1 178,181 - -0.5 178,181 - -0.2 178,289 + GFF3413 0.19 -0.2 178,441 + GFF3413 0.33 -0.3 178,441 + GFF3413 0.33 +0.4 178,442 - GFF3413 0.33 -0.1 178,454 - GFF3413 0.34 +0.5 178,515 + GFF3413 0.39 +0.1 178,518 + GFF3413 0.39 +0.5 178,519 - GFF3413 0.39 -0.2 178,519 - GFF3413 0.39 +0.5 178,523 - GFF3413 0.40 -0.6 178,523 - GFF3413 0.40 +0.5 178,629 + GFF3413 0.49 +0.8 178,799 - GFF3413 0.64 +0.3 178,802 - GFF3413 0.65 -0.6 178,877 - GFF3413 0.71 -0.6
Or see this region's nucleotide sequence