Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3377

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
142,033	+				+0.6
142,033	+				+0.5
142,456	+				-1.3
142,492	+				-0.8
142,549	-				-1.7
142,644	+		GFF3377	0.10	-1.7
142,657	+		GFF3377	0.11	-0.2
142,931	-		GFF3377	0.34	+0.1
142,931	-		GFF3377	0.34	-1.2
142,937	+		GFF3377	0.34	-0.3
142,937	+		GFF3377	0.34	-0.8
142,938	-		GFF3377	0.34	-1.1
143,085	+		GFF3377	0.47	-1.5
143,288	+		GFF3377	0.63	-0.9
143,288	+		GFF3377	0.63	+0.2
143,294	-		GFF3377	0.64	-0.6
143,533	-		GFF3377	0.84	-1.0
143,533	-		GFF3377	0.84	-0.8
143,539	+		GFF3377	0.84	-1.6
143,698	+				-1.6
143,726	+				-3.5
143,790	-				+0.2
143,892	+				+0.3
144,507	+		GFF3378	0.81	-0.3
144,575	-		GFF3378	0.89	-0.6