Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF334

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
47,869	-				-3.2
47,993	+		GFF332	0.12	-0.9
47,993	+		GFF332	0.12	-1.2
47,994	-		GFF332	0.12	-3.4
48,302	-		GFF332	0.57	-2.9
48,341	+		GFF332	0.63	-1.7
48,436	+		GFF332	0.77	-0.9
48,437	-		GFF332	0.77	-2.4
48,626	+		GFF333	0.25	-0.4
48,964	+				+1.1
49,075	-				-0.3
49,199	-		GFF334	0.14	-0.7
49,226	+		GFF334	0.15	-0.6
49,437	-		GFF334	0.23	+0.1
49,472	+		GFF334	0.24	-0.5
49,490	+		GFF334	0.25	-0.5
49,567	+		GFF334	0.28	-0.0
49,713	-		GFF334	0.33	-0.4
49,960	+		GFF334	0.42	-0.3
49,974	-		GFF334	0.43	-1.5
50,008	+		GFF334	0.44	-0.4
50,048	+		GFF334	0.45	-0.7
50,048	+		GFF334	0.45	-0.3
50,049	-		GFF334	0.45	-0.5
50,170	+		GFF334	0.50	-0.5
50,261	-		GFF334	0.53	-0.9
50,261	-		GFF334	0.53	-0.2
50,344	-		GFF334	0.56	-0.0
50,365	+		GFF334	0.57	-0.1
50,384	+		GFF334	0.58	-1.3
50,384	+		GFF334	0.58	-2.2
50,384	+		GFF334	0.58	+0.7
50,384	+		GFF334	0.58	-0.0
50,385	-		GFF334	0.58	-0.0
50,416	+		GFF334	0.59	-0.2
50,442	-		GFF334	0.60	-0.9
50,847	-		GFF334	0.75	+0.2
50,850	-		GFF334	0.75	-0.2
50,924	+		GFF334	0.78	-0.9
50,925	-		GFF334	0.78	-0.2
51,045	+		GFF334	0.82	-0.9
51,141	-		GFF334	0.85	-0.0
51,294	-				-0.4
51,320	+				-0.6
51,349	+				-1.0
51,384	+				-1.3
51,384	+				-0.0
51,386	+				-1.2
51,475	-				-0.2
51,535	-				+0.4
51,592	+				+0.1
51,625	+				+0.3
51,626	-				-0.3
51,778	-				+0.8
51,896	-		GFF335	0.18	-0.4
52,000	+		GFF335	0.37	+0.7
52,073	-		GFF335	0.51	-0.2
52,073	-		GFF335	0.51	+0.5
52,076	+		GFF335	0.52	-0.1
52,076	+		GFF335	0.52	+0.0
52,076	+		GFF335	0.52	+0.2
52,077	-		GFF335	0.52	-0.1
52,077	-		GFF335	0.52	+0.7
52,122	-		GFF335	0.60	-0.4
52,131	+		GFF335	0.62	+0.3
52,131	+		GFF335	0.62	-1.5
52,211	-		GFF335	0.77	-0.1
52,211	-		GFF335	0.77	+0.7
52,225	-		GFF335	0.80	+0.3
52,242	-		GFF335	0.83	-0.3
52,265	-		GFF335	0.88	+0.6
52,329	-				+0.4
52,526	-				-0.3