Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3248

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
21,938	+		GFF3246	0.90	-0.0
21,972	+				-0.8
21,973	-				+0.7
22,020	+				+0.3
22,021	-				+0.1
22,060	-				-1.6
22,069	+				-0.5
22,145	+				+0.4
22,166	-				+0.1
22,397	+		GFF3247	0.20	-0.8
22,489	+		GFF3247	0.40	-0.3
23,067	-		GFF3248	0.22	-0.7
23,243	-		GFF3248	0.38	-2.9
23,318	-		GFF3248	0.45	-3.0
23,473	-		GFF3248	0.60	-2.7
23,519	-		GFF3248	0.64	-2.7
23,605	-		GFF3248	0.72	-2.0
23,658	-		GFF3248	0.77	-3.0
23,831	-				-1.1
23,988	-				-0.9
23,988	-				-0.1
23,992	-				-1.7
24,022	-				-0.6
24,036	-				-0.4
24,048	-				-0.7
24,093	+				-0.3
24,121	-				-0.8
24,181	+				+0.2
24,339	+		GFF3249	0.19	+1.4
24,405	+		GFF3249	0.32	-0.1
24,406	-		GFF3249	0.33	+0.1
24,416	-		GFF3249	0.35	-0.8
24,426	-		GFF3249	0.36	-0.8
24,580	-		GFF3249	0.67	-1.8
24,746	-				-2.1
24,749	+				+0.2
24,750	-				-1.1
24,750	-				-0.6