Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3239 and GFF3240 are separated by 12 nucleotides GFF3240 and GFF3241 are separated by 14 nucleotides
GFF3239 - 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-), at 11,750 to 13,858
GFF3239
GFF3240 - COG0488: ATPase components of ABC transporters with duplicated ATPase domains, at 13,871 to 15,778
GFF3240
GFF3241 - Paraquat-inducible protein A, at 15,793 to 17,046
GFF3241
Position (kb) 13
14
15
16 Strain fitness (log2 ratio) -2
-1
0
1 at 12.879 kb on - strand, within GFF3239 at 13.010 kb on + strand, within GFF3239 at 13.133 kb on - strand, within GFF3239 at 13.185 kb on + strand, within GFF3239 at 13.266 kb on - strand, within GFF3239 at 13.268 kb on - strand, within GFF3239 at 13.278 kb on + strand, within GFF3239 at 13.391 kb on + strand, within GFF3239 at 13.454 kb on - strand, within GFF3239 at 13.718 kb on - strand at 13.869 kb on - strand at 14.582 kb on + strand, within GFF3240 at 14.856 kb on + strand, within GFF3240 at 14.857 kb on - strand, within GFF3240 at 14.874 kb on + strand, within GFF3240 at 14.875 kb on - strand, within GFF3240 at 15.109 kb on - strand, within GFF3240 at 15.115 kb on + strand, within GFF3240 at 15.342 kb on + strand, within GFF3240 at 15.343 kb on - strand, within GFF3240 at 15.343 kb on - strand, within GFF3240 at 15.376 kb on + strand, within GFF3240 at 15.376 kb on + strand, within GFF3240 at 15.427 kb on + strand, within GFF3240 at 15.427 kb on + strand, within GFF3240 at 15.555 kb on + strand, within GFF3240 at 15.555 kb on + strand, within GFF3240 at 15.555 kb on + strand, within GFF3240 at 15.560 kb on + strand, within GFF3240 at 15.588 kb on + strand at 15.824 kb on + strand at 15.825 kb on - strand at 15.825 kb on - strand at 15.953 kb on - strand, within GFF3241 at 15.973 kb on - strand, within GFF3241 at 16.152 kb on - strand, within GFF3241 at 16.314 kb on + strand, within GFF3241 at 16.528 kb on + strand, within GFF3241 at 16.529 kb on - strand, within GFF3241 at 16.728 kb on + strand, within GFF3241
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 12,879 - GFF3239 0.54 -1.3 13,010 + GFF3239 0.60 +0.2 13,133 - GFF3239 0.66 +0.5 13,185 + GFF3239 0.68 -0.1 13,266 - GFF3239 0.72 -0.5 13,268 - GFF3239 0.72 -0.7 13,278 + GFF3239 0.72 +0.3 13,391 + GFF3239 0.78 -0.0 13,454 - GFF3239 0.81 +0.3 13,718 - -0.9 13,869 - -0.3 14,582 + GFF3240 0.37 -0.1 14,856 + GFF3240 0.52 -0.1 14,857 - GFF3240 0.52 -0.5 14,874 + GFF3240 0.53 +0.4 14,875 - GFF3240 0.53 +0.2 15,109 - GFF3240 0.65 +0.1 15,115 + GFF3240 0.65 -0.6 15,342 + GFF3240 0.77 -0.1 15,343 - GFF3240 0.77 +0.0 15,343 - GFF3240 0.77 -0.9 15,376 + GFF3240 0.79 -0.2 15,376 + GFF3240 0.79 +0.3 15,427 + GFF3240 0.82 -0.2 15,427 + GFF3240 0.82 +0.2 15,555 + GFF3240 0.88 +0.1 15,555 + GFF3240 0.88 -0.6 15,555 + GFF3240 0.88 -0.3 15,560 + GFF3240 0.89 -0.3 15,588 + +1.3 15,824 + +0.1 15,825 - -0.2 15,825 - -1.8 15,953 - GFF3241 0.13 +0.5 15,973 - GFF3241 0.14 -0.2 16,152 - GFF3241 0.29 +0.6 16,314 + GFF3241 0.42 +0.1 16,528 + GFF3241 0.59 -0.6 16,529 - GFF3241 0.59 -1.1 16,728 + GFF3241 0.75 +0.5
Or see this region's nucleotide sequence