Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3212

Experiment: Acanthamoeba sp., muxed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3211 and GFF3212 are separated by 540 nucleotides GFF3211 - Threonine catabolic operon transcriptional activator TdcA, at 217,608 to 218,546 GFF3211 GFF3212 - FIG01046763: hypothetical protein, at 219,087 to 219,317 GFF3212 Position (kb) 219 220Strain fitness (log2 ratio) -1 0 1at 218.195 kb on + strand, within GFF3211at 218.196 kb on - strand, within GFF3211at 218.276 kb on + strand, within GFF3211at 218.340 kb on + strand, within GFF3211at 218.341 kb on - strand, within GFF3211at 219.144 kb on + strand, within GFF3212

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1
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218,195 + GFF3211 0.63 +0.6
218,196 - GFF3211 0.63 +0.1
218,276 + GFF3211 0.71 +0.1
218,340 + GFF3211 0.78 +0.3
218,341 - GFF3211 0.78 -0.1
219,144 + GFF3212 0.25 -0.3

Or see this region's nucleotide sequence