Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3117

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
123,725	+				-1.0
123,726	-				-0.2
124,075	-		GFF3116	0.41	+0.4
124,149	-		GFF3116	0.49	+0.4
124,272	+		GFF3116	0.63	+0.6
124,339	+		GFF3116	0.71	-0.1
124,340	-		GFF3116	0.71	-0.4
124,519	+				+0.1
124,520	-				+1.7
124,520	-				-0.8
124,520	-				-0.1
124,525	+				+0.1
124,525	+				+0.5
124,526	-				+0.1
124,549	+				+0.2
124,550	-				-1.3
124,593	-				-0.0
124,615	-				+0.7
124,869	-		GFF3117	0.37	+1.5
124,912	+		GFF3117	0.47	+0.8
124,945	-		GFF3117	0.55	+0.2
124,981	+		GFF3117	0.63	+0.5
125,175	-				-0.7
125,232	-		GFF3118	0.12	+0.4
125,265	+		GFF3118	0.16	-0.1
125,266	-		GFF3118	0.17	-0.2
125,359	+		GFF3118	0.29	+0.0
125,423	-		GFF3118	0.38	+0.7
125,570	-		GFF3118	0.58	-2.3
125,570	-		GFF3118	0.58	-0.2
125,715	-		GFF3118	0.78	+0.7
125,833	-				-0.3
125,869	+				-0.5
125,916	+		GFF3119	0.33	+0.2
125,917	-		GFF3119	0.33	-0.2
125,917	-		GFF3119	0.33	+0.3
125,917	-		GFF3119	0.33	-0.0
125,920	-		GFF3119	0.36	+0.2
125,920	-		GFF3119	0.36	-0.0
125,920	-		GFF3119	0.36	+0.5
125,960	+		GFF3119	0.64	+0.1
125,960	+		GFF3119	0.64	+0.4
125,968	+		GFF3119	0.70	-0.2
125,982	+		GFF3119	0.80	-0.2
126,029	-				+0.1
126,079	+				-0.1
126,081	+				+0.1
126,091	-				-0.2
126,091	-				+0.3