Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3106

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
114,713	+		GFF3105	0.46	+0.4
114,718	+		GFF3105	0.47	-0.9
114,820	+		GFF3105	0.53	-1.3
114,852	-		GFF3105	0.55	+0.3
114,854	-		GFF3105	0.55	-0.1
114,901	+		GFF3105	0.57	-0.2
114,926	+		GFF3105	0.59	+0.6
114,983	+		GFF3105	0.62	-0.4
115,054	+		GFF3105	0.66	+0.0
115,054	+		GFF3105	0.66	+0.4
115,130	+		GFF3105	0.71	+0.3
115,131	-		GFF3105	0.71	+0.3
115,135	-		GFF3105	0.71	-1.1
115,346	+		GFF3105	0.84	+0.2
115,356	-		GFF3105	0.84	+0.0
115,357	+		GFF3105	0.84	-0.2
115,357	+		GFF3105	0.84	+0.5
115,358	-		GFF3105	0.84	+0.1
115,449	-		GFF3105	0.90	+0.7
115,449	-		GFF3105	0.90	+0.2
115,608	-				+0.8
115,704	+				+0.3
115,704	+				-0.4
115,704	+				+0.1
115,705	-				-0.8
115,705	-				-0.3
115,735	+				+0.2
115,864	+		GFF3106	0.21	-0.3
115,876	+		GFF3106	0.22	+0.4
115,990	-		GFF3106	0.31	-1.1
116,045	-		GFF3106	0.36	-0.0
116,123	+		GFF3106	0.42	-1.3
116,124	-		GFF3106	0.43	+0.2
116,184	+		GFF3106	0.48	-0.8
116,211	+		GFF3106	0.50	-0.6
116,379	+		GFF3106	0.64	-0.1
116,379	+		GFF3106	0.64	-0.0
116,379	+		GFF3106	0.64	+0.5
116,379	+		GFF3106	0.64	-0.6
116,380	-		GFF3106	0.64	+0.6
116,442	+		GFF3106	0.70	-0.2
116,442	+		GFF3106	0.70	+0.7
116,443	-		GFF3106	0.70	+0.3
116,448	+		GFF3106	0.70	-0.3
116,480	-		GFF3106	0.73	-0.9
116,551	-		GFF3106	0.79	-0.4
116,572	-		GFF3106	0.81	+0.1
116,719	+				+0.1
116,719	+				+0.6
116,758	+				-1.8
116,883	+				+0.6
116,884	-				+0.1
116,884	-				-1.0
116,894	+		GFF3107	0.11	+0.2
116,895	-		GFF3107	0.11	+0.3
117,045	-		GFF3107	0.26	-0.1
117,045	-		GFF3107	0.26	-0.5
117,061	+		GFF3107	0.27	+0.7
117,061	+		GFF3107	0.27	-1.2
117,296	+		GFF3107	0.51	-0.2
117,297	-		GFF3107	0.51	-0.9
117,297	-		GFF3107	0.51	+0.3
117,301	-		GFF3107	0.52	-0.2
117,307	+		GFF3107	0.52	-0.4
117,323	+		GFF3107	0.54	-0.9
117,324	-		GFF3107	0.54	-0.0
117,358	+		GFF3107	0.58	-0.1
117,423	-		GFF3107	0.64	+0.0
117,440	+		GFF3107	0.66	+0.6
117,440	+		GFF3107	0.66	-0.7
117,440	+		GFF3107	0.66	+0.8
117,441	-		GFF3107	0.66	-0.4
117,441	-		GFF3107	0.66	-0.4
117,441	-		GFF3107	0.66	+0.2
117,457	+		GFF3107	0.68	-0.2
117,463	+		GFF3107	0.68	+0.5
117,533	-		GFF3107	0.75	-0.6
117,653	-		GFF3107	0.87	+0.9
117,659	+		GFF3107	0.88	-0.7
117,755	+				+0.3
117,780	+				-0.3