Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2936 and GFF2937 are separated by 18 nucleotides GFF2937 and GFF2938 are separated by 4 nucleotides GFF2938 and GFF2939 are separated by 7 nucleotides
GFF2936 - Uncharacterized ABC transporter, auxiliary component YrbC, at 18,422 to 19,057
GFF2936
GFF2937 - Uncharacterized ABC transporter, periplasmic component YrbD, at 19,076 to 19,627
GFF2937
GFF2938 - Uncharacterized ABC transporter, permease component YrbE, at 19,632 to 20,414
GFF2938
GFF2939 - Uncharacterized ABC transporter, ATP-binding protein YrbF, at 20,422 to 21,234
GFF2939
Position (kb) 19
20
21 Strain fitness (log2 ratio) -1
0
1 at 18.724 kb on - strand, within GFF2936 at 18.724 kb on - strand, within GFF2936 at 18.814 kb on - strand, within GFF2936 at 18.844 kb on - strand, within GFF2936 at 19.011 kb on - strand at 19.078 kb on - strand at 19.173 kb on + strand, within GFF2937 at 19.192 kb on + strand, within GFF2937 at 19.352 kb on - strand, within GFF2937 at 19.357 kb on + strand, within GFF2937 at 19.359 kb on + strand, within GFF2937 at 19.360 kb on - strand, within GFF2937 at 19.418 kb on - strand, within GFF2937 at 19.529 kb on - strand, within GFF2937 at 19.751 kb on - strand, within GFF2938 at 19.827 kb on - strand, within GFF2938 at 19.934 kb on + strand, within GFF2938 at 19.934 kb on + strand, within GFF2938 at 19.944 kb on + strand, within GFF2938 at 20.174 kb on - strand, within GFF2938 at 20.243 kb on + strand, within GFF2938 at 20.423 kb on + strand at 20.423 kb on + strand at 20.424 kb on - strand at 20.605 kb on - strand, within GFF2939 at 20.700 kb on + strand, within GFF2939 at 20.873 kb on - strand, within GFF2939 at 20.913 kb on - strand, within GFF2939 at 20.976 kb on + strand, within GFF2939 at 20.976 kb on + strand, within GFF2939 at 20.977 kb on - strand, within GFF2939 at 21.037 kb on + strand, within GFF2939 at 21.038 kb on - strand, within GFF2939 at 21.097 kb on - strand, within GFF2939 at 21.156 kb on + strand at 21.250 kb on - strand at 21.250 kb on - strand at 21.300 kb on + strand at 21.301 kb on - strand at 21.304 kb on + strand at 21.304 kb on + strand at 21.311 kb on + strand at 21.401 kb on - strand at 21.401 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 18,724 - GFF2936 0.47 +0.3 18,724 - GFF2936 0.47 -0.4 18,814 - GFF2936 0.62 +1.0 18,844 - GFF2936 0.66 -0.2 19,011 - +0.1 19,078 - +0.4 19,173 + GFF2937 0.18 -0.8 19,192 + GFF2937 0.21 +0.3 19,352 - GFF2937 0.50 +0.4 19,357 + GFF2937 0.51 -0.9 19,359 + GFF2937 0.51 +1.0 19,360 - GFF2937 0.51 +0.1 19,418 - GFF2937 0.62 -0.3 19,529 - GFF2937 0.82 +0.6 19,751 - GFF2938 0.15 -0.0 19,827 - GFF2938 0.25 -0.6 19,934 + GFF2938 0.39 -0.1 19,934 + GFF2938 0.39 -0.2 19,944 + GFF2938 0.40 +0.1 20,174 - GFF2938 0.69 -0.5 20,243 + GFF2938 0.78 -1.5 20,423 + -0.2 20,423 + +0.3 20,424 - -0.9 20,605 - GFF2939 0.23 -0.1 20,700 + GFF2939 0.34 -1.4 20,873 - GFF2939 0.55 -0.7 20,913 - GFF2939 0.60 -0.7 20,976 + GFF2939 0.68 -0.1 20,976 + GFF2939 0.68 -0.1 20,977 - GFF2939 0.68 +0.9 21,037 + GFF2939 0.76 -0.8 21,038 - GFF2939 0.76 +0.0 21,097 - GFF2939 0.83 +0.0 21,156 + -0.0 21,250 - +0.2 21,250 - -0.2 21,300 + +0.4 21,301 - -0.0 21,304 + -0.6 21,304 + +0.6 21,311 + -0.2 21,401 - -0.1 21,401 - +0.7
Or see this region's nucleotide sequence