Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2877

Experiment: Acanthamoeba sp., muxed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2908 and GFF2909 are separated by 54 nucleotidesGFF2909 and GFF2877 are separated by 102 nucleotidesGFF2877 and GFF2878 are separated by 206 nucleotidesGFF2878 and GFF2879 overlap by 4 nucleotides GFF2908 - tRNA-His-GTG, at 76 to 151 GFF2908 GFF2909 - tRNA-Arg-CCG, at 206 to 282 GFF2909 GFF2877 - Probable transport protein YifK, at 385 to 1,770 GFF2877 GFF2878 - Probable UDP-N-acetyl-D-mannosaminuronic acid transferase (EC 2.4.1.-), at 1,977 to 2,717 GFF2878 GFF2879 - Putative ECA polymerase, at 2,714 to 4,072 GFF2879 Position (kb) 0 1 2Strain fitness (log2 ratio) -2 -1 0 1at 0.069 kb on - strandat 0.069 kb on - strandat 0.071 kb on - strandat 0.071 kb on - strandat 0.501 kb on + strandat 0.506 kb on + strandat 0.507 kb on - strandat 0.549 kb on - strand, within GFF2877at 0.549 kb on - strand, within GFF2877at 0.567 kb on + strand, within GFF2877at 0.603 kb on + strand, within GFF2877at 0.719 kb on + strand, within GFF2877at 0.720 kb on - strand, within GFF2877at 0.858 kb on + strand, within GFF2877at 0.860 kb on + strand, within GFF2877at 0.861 kb on - strand, within GFF2877at 0.861 kb on - strand, within GFF2877at 1.029 kb on - strand, within GFF2877at 1.112 kb on - strand, within GFF2877at 1.134 kb on - strand, within GFF2877at 1.287 kb on + strand, within GFF2877at 1.430 kb on + strand, within GFF2877at 1.430 kb on + strand, within GFF2877at 1.521 kb on + strand, within GFF2877at 1.521 kb on + strand, within GFF2877at 1.522 kb on - strand, within GFF2877at 1.522 kb on - strand, within GFF2877at 1.523 kb on + strand, within GFF2877at 1.825 kb on + strandat 1.826 kb on - strandat 1.894 kb on + strandat 1.923 kb on + strandat 1.940 kb on - strandat 1.979 kb on - strandat 2.036 kb on + strandat 2.131 kb on + strand, within GFF2878at 2.132 kb on - strand, within GFF2878at 2.132 kb on - strand, within GFF2878at 2.132 kb on - strand, within GFF2878at 2.132 kb on - strand, within GFF2878at 2.150 kb on + strand, within GFF2878at 2.151 kb on - strand, within GFF2878at 2.151 kb on - strand, within GFF2878at 2.152 kb on + strand, within GFF2878at 2.152 kb on + strand, within GFF2878at 2.152 kb on + strand, within GFF2878at 2.152 kb on + strand, within GFF2878at 2.154 kb on + strand, within GFF2878at 2.155 kb on - strand, within GFF2878at 2.155 kb on - strand, within GFF2878at 2.155 kb on - strand, within GFF2878at 2.290 kb on + strand, within GFF2878at 2.290 kb on + strand, within GFF2878at 2.290 kb on + strand, within GFF2878at 2.312 kb on + strand, within GFF2878at 2.481 kb on + strand, within GFF2878at 2.482 kb on - strand, within GFF2878at 2.632 kb on + strand, within GFF2878at 2.673 kb on + strandat 2.756 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1
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69 - +0.1
69 - +0.1
71 - +0.3
71 - +0.0
501 + +0.3
506 + +0.3
507 - +1.1
549 - GFF2877 0.12 +1.0
549 - GFF2877 0.12 +0.0
567 + GFF2877 0.13 -0.9
603 + GFF2877 0.16 +0.1
719 + GFF2877 0.24 +0.3
720 - GFF2877 0.24 -1.0
858 + GFF2877 0.34 +0.1
860 + GFF2877 0.34 -0.1
861 - GFF2877 0.34 +0.2
861 - GFF2877 0.34 +0.0
1,029 - GFF2877 0.46 +0.8
1,112 - GFF2877 0.52 +0.3
1,134 - GFF2877 0.54 +0.1
1,287 + GFF2877 0.65 -0.1
1,430 + GFF2877 0.75 +0.4
1,430 + GFF2877 0.75 +0.4
1,521 + GFF2877 0.82 +1.1
1,521 + GFF2877 0.82 -1.2
1,522 - GFF2877 0.82 +0.3
1,522 - GFF2877 0.82 -0.3
1,523 + GFF2877 0.82 +0.8
1,825 + -2.2
1,826 - +0.5
1,894 + +0.3
1,923 + -0.1
1,940 - +0.4
1,979 - +0.3
2,036 + +0.4
2,131 + GFF2878 0.21 -1.5
2,132 - GFF2878 0.21 -1.3
2,132 - GFF2878 0.21 -0.2
2,132 - GFF2878 0.21 -2.0
2,132 - GFF2878 0.21 -0.8
2,150 + GFF2878 0.23 -0.4
2,151 - GFF2878 0.23 -0.2
2,151 - GFF2878 0.23 -2.7
2,152 + GFF2878 0.24 -0.7
2,152 + GFF2878 0.24 -1.1
2,152 + GFF2878 0.24 -1.1
2,152 + GFF2878 0.24 -0.9
2,154 + GFF2878 0.24 -1.2
2,155 - GFF2878 0.24 -1.4
2,155 - GFF2878 0.24 -0.7
2,155 - GFF2878 0.24 -0.3
2,290 + GFF2878 0.42 +0.3
2,290 + GFF2878 0.42 -1.5
2,290 + GFF2878 0.42 -0.9
2,312 + GFF2878 0.45 +0.4
2,481 + GFF2878 0.68 -0.5
2,482 - GFF2878 0.68 -0.4
2,632 + GFF2878 0.88 -0.8
2,673 + -0.0
2,756 - +0.0

Or see this region's nucleotide sequence