Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2835 and GFF2836 overlap by 4 nucleotides GFF2836 and GFF2837 are separated by 65 nucleotides GFF2837 and GFF2838 are separated by 219 nucleotides
GFF2835 - Putative membrane protein, at 357,416 to 357,982
GFF2835
GFF2836 - Ribosomal RNA large subunit methyltransferase A (EC 2.1.1.51), at 357,979 to 358,788
GFF2836
GFF2837 - Cell division protein FtsI [Peptidoglycan synthetase] (EC 2.4.1.129), at 358,854 to 360,599
GFF2837
GFF2838 - Cold shock protein CspC, at 360,819 to 361,028
GFF2838
Position (kb) 358
359
360
361 Strain fitness (log2 ratio) -1
0
1 at 357.864 kb on + strand, within GFF2835 at 358.137 kb on - strand, within GFF2836 at 358.229 kb on - strand, within GFF2836 at 358.311 kb on + strand, within GFF2836 at 358.434 kb on + strand, within GFF2836 at 358.497 kb on - strand, within GFF2836 at 358.564 kb on - strand, within GFF2836 at 358.663 kb on - strand, within GFF2836 at 358.729 kb on + strand at 358.730 kb on - strand at 358.730 kb on - strand at 358.731 kb on + strand at 358.732 kb on - strand at 358.740 kb on + strand at 358.780 kb on - strand at 358.919 kb on + strand at 359.025 kb on - strand at 359.079 kb on - strand, within GFF2837 at 359.081 kb on - strand, within GFF2837 at 359.090 kb on - strand, within GFF2837 at 359.090 kb on - strand, within GFF2837 at 359.090 kb on - strand, within GFF2837 at 359.150 kb on + strand, within GFF2837 at 359.213 kb on + strand, within GFF2837 at 359.214 kb on - strand, within GFF2837 at 359.481 kb on - strand, within GFF2837 at 359.482 kb on + strand, within GFF2837 at 359.493 kb on + strand, within GFF2837 at 360.047 kb on + strand, within GFF2837 at 360.304 kb on + strand, within GFF2837 at 360.325 kb on - strand, within GFF2837 at 360.446 kb on + strand at 360.446 kb on + strand at 360.446 kb on + strand at 360.556 kb on - strand at 360.832 kb on - strand at 360.937 kb on - strand, within GFF2838 at 361.017 kb on - strand at 361.107 kb on - strand at 361.110 kb on - strand at 361.197 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 357,864 + GFF2835 0.79 -0.1 358,137 - GFF2836 0.20 -0.1 358,229 - GFF2836 0.31 +0.3 358,311 + GFF2836 0.41 +0.1 358,434 + GFF2836 0.56 -0.3 358,497 - GFF2836 0.64 +0.4 358,564 - GFF2836 0.72 +0.4 358,663 - GFF2836 0.84 -0.5 358,729 + -0.4 358,730 - +0.2 358,730 - -0.2 358,731 + +0.6 358,732 - +0.6 358,740 + -0.6 358,780 - +0.7 358,919 + -0.2 359,025 - +0.3 359,079 - GFF2837 0.13 -0.9 359,081 - GFF2837 0.13 +0.0 359,090 - GFF2837 0.14 -0.6 359,090 - GFF2837 0.14 +0.1 359,090 - GFF2837 0.14 -0.4 359,150 + GFF2837 0.17 -0.1 359,213 + GFF2837 0.21 +0.5 359,214 - GFF2837 0.21 -0.1 359,481 - GFF2837 0.36 -0.5 359,482 + GFF2837 0.36 -0.5 359,493 + GFF2837 0.37 -0.5 360,047 + GFF2837 0.68 -0.0 360,304 + GFF2837 0.83 -0.5 360,325 - GFF2837 0.84 +0.6 360,446 + +0.0 360,446 + +0.2 360,446 + -0.1 360,556 - +0.8 360,832 - +0.7 360,937 - GFF2838 0.56 +0.3 361,017 - -0.2 361,107 - -0.5 361,110 - +0.1 361,197 - +1.4
Or see this region's nucleotide sequence