Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2828 and GFF2829 are separated by 137 nucleotides GFF2829 and GFF2830 are separated by 21 nucleotides
GFF2828 - L-serine dehydratase, beta subunit (EC 4.3.1.17) / L-serine dehydratase, alpha subunit (EC 4.3.1.17), at 348,714 to 350,012
GFF2828
GFF2829 - Rtn protein, at 350,150 to 351,751
GFF2829
GFF2830 - Magnesium and cobalt efflux protein CorC, at 351,773 to 353,332
GFF2830
Position (kb) 350
351
352 Strain fitness (log2 ratio) -2
-1
0
1
2 at 349.247 kb on + strand, within GFF2828 at 349.248 kb on - strand, within GFF2828 at 349.383 kb on - strand, within GFF2828 at 349.582 kb on - strand, within GFF2828 at 349.823 kb on + strand, within GFF2828 at 349.932 kb on + strand at 350.044 kb on - strand at 350.358 kb on + strand, within GFF2829 at 350.498 kb on - strand, within GFF2829 at 350.500 kb on + strand, within GFF2829 at 350.672 kb on - strand, within GFF2829 at 350.677 kb on - strand, within GFF2829 at 350.701 kb on + strand, within GFF2829 at 350.740 kb on - strand, within GFF2829 at 350.740 kb on - strand, within GFF2829 at 350.741 kb on + strand, within GFF2829 at 350.776 kb on - strand, within GFF2829 at 350.824 kb on + strand, within GFF2829 at 350.824 kb on + strand, within GFF2829 at 350.856 kb on + strand, within GFF2829 at 350.923 kb on + strand, within GFF2829 at 350.924 kb on - strand, within GFF2829 at 351.529 kb on + strand, within GFF2829 at 351.639 kb on - strand at 351.644 kb on + strand at 351.747 kb on + strand at 351.748 kb on - strand at 351.898 kb on + strand at 352.215 kb on - strand, within GFF2830 at 352.544 kb on - strand, within GFF2830 at 352.628 kb on - strand, within GFF2830
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 349,247 + GFF2828 0.41 +0.9 349,248 - GFF2828 0.41 -0.3 349,383 - GFF2828 0.52 +0.0 349,582 - GFF2828 0.67 +0.3 349,823 + GFF2828 0.85 -2.5 349,932 + +2.0 350,044 - -0.1 350,358 + GFF2829 0.13 +0.2 350,498 - GFF2829 0.22 +0.9 350,500 + GFF2829 0.22 +0.2 350,672 - GFF2829 0.33 +0.9 350,677 - GFF2829 0.33 +0.1 350,701 + GFF2829 0.34 +0.9 350,740 - GFF2829 0.37 -0.3 350,740 - GFF2829 0.37 +0.5 350,741 + GFF2829 0.37 -0.4 350,776 - GFF2829 0.39 +0.1 350,824 + GFF2829 0.42 +0.3 350,824 + GFF2829 0.42 +0.4 350,856 + GFF2829 0.44 +1.1 350,923 + GFF2829 0.48 -0.2 350,924 - GFF2829 0.48 -0.1 351,529 + GFF2829 0.86 -0.2 351,639 - +0.2 351,644 + +0.3 351,747 + +0.3 351,748 - -0.3 351,898 + +0.2 352,215 - GFF2830 0.28 -0.2 352,544 - GFF2830 0.49 -0.2 352,628 - GFF2830 0.55 +0.0
Or see this region's nucleotide sequence