Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2422 and GFF2423 are separated by 15 nucleotides GFF2423 and GFF2424 are separated by 7 nucleotides GFF2424 and GFF2425 overlap by 13 nucleotides GFF2425 and GFF2426 are separated by 54 nucleotides GFF2426 and GFF2427 are separated by 385 nucleotides
GFF2422 - Thiosulfate sulfurtransferase, rhodanese (EC 2.8.1.1), at 41,390 to 42,232
GFF2422
GFF2423 - hypothetical protein, at 42,248 to 42,361
GFF2423
GFF2424 - hypothetical protein, at 42,369 to 42,491
GFF2424
GFF2425 - FIG074102: hypothetical protein, at 42,479 to 43,147
GFF2425
GFF2426 - hypothetical protein, at 43,202 to 43,330
GFF2426
GFF2427 - Protein SseB, at 43,716 to 44,462
GFF2427
Position (kb) 42
43
44 Strain fitness (log2 ratio) -1
0
1 at 41.591 kb on - strand, within GFF2422 at 41.666 kb on + strand, within GFF2422 at 41.667 kb on - strand, within GFF2422 at 41.667 kb on - strand, within GFF2422 at 41.667 kb on - strand, within GFF2422 at 41.989 kb on - strand, within GFF2422 at 42.231 kb on - strand at 42.541 kb on + strand at 42.677 kb on - strand, within GFF2425 at 42.884 kb on + strand, within GFF2425 at 43.345 kb on - strand at 43.345 kb on - strand at 43.478 kb on + strand at 43.496 kb on - strand at 43.570 kb on + strand at 43.677 kb on + strand at 43.796 kb on + strand, within GFF2427 at 44.016 kb on - strand, within GFF2427 at 44.061 kb on + strand, within GFF2427
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 41,591 - GFF2422 0.24 +0.0 41,666 + GFF2422 0.33 -0.2 41,667 - GFF2422 0.33 -0.4 41,667 - GFF2422 0.33 +0.2 41,667 - GFF2422 0.33 -0.0 41,989 - GFF2422 0.71 +1.6 42,231 - +0.6 42,541 + -0.4 42,677 - GFF2425 0.30 +0.7 42,884 + GFF2425 0.61 +0.3 43,345 - +0.7 43,345 - +0.7 43,478 + -0.5 43,496 - +0.1 43,570 + -0.1 43,677 + -0.2 43,796 + GFF2427 0.11 +0.8 44,016 - GFF2427 0.40 -0.2 44,061 + GFF2427 0.46 -0.6
Or see this region's nucleotide sequence