Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2402

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
1,903	+				+0.4
1,906	-				+0.5
1,906	-				+1.2
1,934	-				+0.1
1,984	+				+0.6
1,989	+				-0.1
2,127	+				-0.2
2,180	-				-0.8
2,183	+				+0.7
2,705	+				+0.2
2,705	+				+0.3
2,707	+				+1.4
2,709	+				-0.4
2,709	+				+0.3
2,880	-				-0.6
2,882	+				+0.2
2,882	+				+0.3
2,882	+				-0.1
2,882	+				-0.0
2,882	+				+0.6
2,927	+				+0.5
2,971	+				-0.3
3,049	+				+0.0
3,092	+				-1.5
3,180	-				+0.3
3,184	-				+0.5
3,184	-				+0.6
3,266	+				+0.1
3,267	-				-0.0
3,306	-				+0.0
3,348	-				-0.5
3,411	-				-0.9
3,470	+				+0.4
3,503	+				+0.7
3,561	-				-1.1
3,629	+		GFF2402	0.10	+0.5
3,722	+		GFF2402	0.11	+0.4
3,735	-		GFF2402	0.12	+0.5
3,740	+		GFF2402	0.12	-2.3
3,820	-		GFF2402	0.13	-1.3
3,822	-		GFF2402	0.13	+0.6
3,830	-		GFF2402	0.13	+0.2
3,896	-		GFF2402	0.14	+0.1
3,931	+		GFF2402	0.14	-0.3
3,931	+		GFF2402	0.14	-0.2
3,932	-		GFF2402	0.14	-0.0
4,045	+		GFF2402	0.16	+1.0
4,045	+		GFF2402	0.16	+0.9
4,050	-		GFF2402	0.16	-1.2
4,141	+		GFF2402	0.17	+0.6
4,142	-		GFF2402	0.17	+0.0
4,199	+		GFF2402	0.18	+0.6
4,302	-		GFF2402	0.19	+2.5
4,383	+		GFF2402	0.20	+1.8
4,576	-		GFF2402	0.23	+0.2
4,806	+		GFF2402	0.26	-0.2
4,806	+		GFF2402	0.26	+0.7
4,878	-		GFF2402	0.27	+0.2
4,878	-		GFF2402	0.27	+0.2
4,971	-		GFF2402	0.29	+0.5
4,994	+		GFF2402	0.29	+0.5
4,994	+		GFF2402	0.29	+0.3
5,005	+		GFF2402	0.29	+0.6
5,174	-		GFF2402	0.31	+0.0
5,174	-		GFF2402	0.31	+0.0
5,174	-		GFF2402	0.31	+0.4
5,204	-		GFF2402	0.32	-0.5
5,482	+		GFF2402	0.36	+0.3
5,482	+		GFF2402	0.36	+0.3
5,485	+		GFF2402	0.36	+0.0
5,582	-		GFF2402	0.37	+0.1
5,863	+		GFF2402	0.41	+2.1
5,911	+		GFF2402	0.41	-0.1
6,015	-		GFF2402	0.43	-0.4
6,083	-		GFF2402	0.44	+0.5
6,083	-		GFF2402	0.44	+0.3
6,083	-		GFF2402	0.44	-0.2
6,123	+		GFF2402	0.44	-0.7
6,123	+		GFF2402	0.44	+0.5
6,143	+		GFF2402	0.45	+0.1
6,295	+		GFF2402	0.47	+0.2
6,296	-		GFF2402	0.47	-1.3
6,296	-		GFF2402	0.47	+0.5
6,316	-		GFF2402	0.47	-0.0
6,407	+		GFF2402	0.48	-0.2
6,562	+		GFF2402	0.50	+0.4
6,776	+		GFF2402	0.53	+0.3
6,825	-		GFF2402	0.54	+1.7
7,130	+		GFF2402	0.58	+0.5
7,131	-		GFF2402	0.58	+0.2
7,132	+		GFF2402	0.58	+0.0
7,233	-		GFF2402	0.59	+0.2
7,357	+		GFF2402	0.61	+1.9
7,357	+		GFF2402	0.61	-0.0
7,358	-		GFF2402	0.61	+0.1
7,556	+		GFF2402	0.64	+1.4
7,557	-		GFF2402	0.64	+0.0
7,657	-		GFF2402	0.65	+0.1
8,023	+		GFF2402	0.70	-0.2
8,024	-		GFF2402	0.70	-0.0
8,112	-		GFF2402	0.72	+0.5
8,113	+		GFF2402	0.72	+0.8
8,113	+		GFF2402	0.72	+0.0
8,250	-		GFF2402	0.73	+0.9
8,361	-		GFF2402	0.75	-0.5
8,470	-		GFF2402	0.76	+1.5
8,571	+		GFF2402	0.78	-0.2
8,668	+		GFF2402	0.79	+1.4
8,826	-		GFF2402	0.81	+1.2
8,876	+		GFF2402	0.82	+0.4
8,876	+		GFF2402	0.82	-0.6
8,876	+		GFF2402	0.82	+0.8
8,877	-		GFF2402	0.82	+0.3
9,029	+		GFF2402	0.84	-0.1
9,145	+		GFF2402	0.86	+0.5
9,145	+		GFF2402	0.86	-0.6
9,194	-		GFF2402	0.86	-0.4
9,660	-				+0.5
9,662	-				+0.4
9,662	-				-0.4
9,662	-				-1.4
9,772	-				+0.6
9,772	-				+0.6
9,772	-				+0.5
9,772	-				+0.1
9,773	+				+0.3
9,773	+				-0.2
9,887	+				-0.0
9,915	+				-0.0
10,062	-				-0.1
10,199	+				-0.4
10,200	-				+0.1
10,283	-				+0.5
10,448	-				-1.3
10,451	-				+0.2
10,451	-				+0.3
10,454	+				+0.0
10,454	+				+0.1
10,563	-				-0.1
10,621	+				-0.5
10,622	-				+0.6
10,625	-				+0.1
10,753	+				+0.5
10,754	-				+0.5
10,754	-				+0.5
10,754	-				-0.1
10,791	-				+0.3
10,804	-				+0.6
10,804	-				-0.5
10,804	-				+0.5
10,898	+				+0.4
10,950	-		GFF2403	0.11	-0.2
10,953	-		GFF2403	0.11	+0.2
11,053	+		GFF2403	0.12	-1.1
11,053	+		GFF2403	0.12	+0.1
11,054	-		GFF2403	0.12	-1.1
11,087	-		GFF2403	0.13	+0.9