Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2309 and GFF2310 are separated by 84 nucleotides GFF2310 and GFF2311 overlap by 4 nucleotides GFF2311 and GFF2312 are separated by 92 nucleotides GFF2312 and GFF2313 are separated by 54 nucleotides
GFF2309 - FIG074102: hypothetical protein, at 96,039 to 96,278
GFF2309
GFF2310 - hypothetical protein, at 96,363 to 96,503
GFF2310
GFF2311 - Ribonuclease E inhibitor RraA, at 96,500 to 96,985
GFF2311
GFF2312 - 1,4-dihydroxy-2-naphthoate polyprenyltransferase (EC 2.5.1.74), at 97,078 to 98,019
GFF2312
GFF2313 - ATP-dependent hsl protease ATP-binding subunit HslU, at 98,074 to 99,405
GFF2313
Position (kb) 97
98
99 Strain fitness (log2 ratio) -2
-1
0
1 at 96.203 kb on + strand, within GFF2309 at 96.336 kb on + strand at 96.393 kb on + strand, within GFF2310 at 96.395 kb on + strand, within GFF2310 at 96.438 kb on - strand, within GFF2310 at 96.713 kb on - strand, within GFF2311 at 96.979 kb on - strand at 97.023 kb on - strand at 97.023 kb on - strand at 97.037 kb on - strand at 97.069 kb on - strand at 97.069 kb on - strand at 97.118 kb on - strand at 97.195 kb on + strand, within GFF2312 at 97.196 kb on - strand, within GFF2312 at 97.276 kb on - strand, within GFF2312 at 97.303 kb on + strand, within GFF2312 at 97.387 kb on - strand, within GFF2312 at 97.389 kb on + strand, within GFF2312 at 97.393 kb on - strand, within GFF2312 at 97.407 kb on + strand, within GFF2312 at 97.407 kb on + strand, within GFF2312 at 97.410 kb on + strand, within GFF2312 at 97.477 kb on - strand, within GFF2312 at 97.490 kb on + strand, within GFF2312 at 97.511 kb on - strand, within GFF2312 at 97.511 kb on - strand, within GFF2312 at 97.511 kb on - strand, within GFF2312 at 97.583 kb on + strand, within GFF2312 at 97.645 kb on + strand, within GFF2312 at 97.683 kb on + strand, within GFF2312 at 97.783 kb on - strand, within GFF2312 at 97.809 kb on - strand, within GFF2312 at 97.886 kb on + strand, within GFF2312 at 98.077 kb on + strand at 98.077 kb on + strand at 98.078 kb on - strand at 98.078 kb on - strand at 98.092 kb on + strand at 98.135 kb on + strand at 98.135 kb on + strand at 98.136 kb on - strand at 98.281 kb on - strand, within GFF2313 at 98.281 kb on - strand, within GFF2313 at 98.502 kb on + strand, within GFF2313 at 98.503 kb on - strand, within GFF2313 at 98.503 kb on - strand, within GFF2313 at 98.564 kb on - strand, within GFF2313 at 98.576 kb on - strand, within GFF2313 at 98.576 kb on - strand, within GFF2313 at 98.619 kb on + strand, within GFF2313 at 98.643 kb on + strand, within GFF2313 at 98.764 kb on - strand, within GFF2313 at 98.802 kb on + strand, within GFF2313 at 98.854 kb on + strand, within GFF2313 at 99.004 kb on + strand, within GFF2313 at 99.004 kb on + strand, within GFF2313 at 99.004 kb on + strand, within GFF2313 at 99.004 kb on + strand, within GFF2313 at 99.004 kb on + strand, within GFF2313
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 96,203 + GFF2309 0.68 +0.3 96,336 + -0.3 96,393 + GFF2310 0.21 +0.0 96,395 + GFF2310 0.23 +0.8 96,438 - GFF2310 0.53 +0.3 96,713 - GFF2311 0.44 -1.0 96,979 - +0.5 97,023 - -0.3 97,023 - -0.2 97,037 - -0.9 97,069 - +0.3 97,069 - -0.3 97,118 - -0.9 97,195 + GFF2312 0.12 -2.2 97,196 - GFF2312 0.13 -0.7 97,276 - GFF2312 0.21 +0.2 97,303 + GFF2312 0.24 -1.0 97,387 - GFF2312 0.33 -1.1 97,389 + GFF2312 0.33 -1.0 97,393 - GFF2312 0.33 -0.3 97,407 + GFF2312 0.35 -0.4 97,407 + GFF2312 0.35 -0.5 97,410 + GFF2312 0.35 -0.4 97,477 - GFF2312 0.42 -1.4 97,490 + GFF2312 0.44 -2.5 97,511 - GFF2312 0.46 -0.2 97,511 - GFF2312 0.46 -0.2 97,511 - GFF2312 0.46 -1.1 97,583 + GFF2312 0.54 -0.3 97,645 + GFF2312 0.60 -0.5 97,683 + GFF2312 0.64 +0.1 97,783 - GFF2312 0.75 -0.8 97,809 - GFF2312 0.78 -1.5 97,886 + GFF2312 0.86 -0.4 98,077 + +0.5 98,077 + -0.2 98,078 - -0.3 98,078 - -0.8 98,092 + -0.8 98,135 + +1.3 98,135 + -0.0 98,136 - -0.2 98,281 - GFF2313 0.16 -0.4 98,281 - GFF2313 0.16 -2.0 98,502 + GFF2313 0.32 +0.1 98,503 - GFF2313 0.32 -0.1 98,503 - GFF2313 0.32 -0.8 98,564 - GFF2313 0.37 -0.3 98,576 - GFF2313 0.38 +1.6 98,576 - GFF2313 0.38 -0.1 98,619 + GFF2313 0.41 +1.1 98,643 + GFF2313 0.43 -0.5 98,764 - GFF2313 0.52 -0.8 98,802 + GFF2313 0.55 -0.3 98,854 + GFF2313 0.59 -0.1 99,004 + GFF2313 0.70 +0.2 99,004 + GFF2313 0.70 -0.5 99,004 + GFF2313 0.70 -1.3 99,004 + GFF2313 0.70 +1.3 99,004 + GFF2313 0.70 -1.6
Or see this region's nucleotide sequence