Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF23

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
1,920	-		GFF21	0.86	-0.8
1,922	+		GFF21	0.86	+0.5
1,923	-		GFF21	0.86	+0.1
1,968	-				-0.9
2,044	+				+0.3
2,050	+				-0.4
2,173	+		GFF22	0.15	+0.0
2,174	-		GFF22	0.16	+0.0
2,197	-		GFF22	0.19	-0.2
2,263	-		GFF22	0.30	+0.2
2,339	+		GFF22	0.41	+0.5
2,376	+		GFF22	0.47	-0.3
2,396	+		GFF22	0.50	+0.2
2,515	-		GFF22	0.69	+0.0
2,594	-		GFF22	0.81	+0.2
2,609	-		GFF22	0.84	-0.1
2,609	-		GFF22	0.84	-0.0
2,628	+		GFF22	0.87	+0.1
2,707	-				+0.6
2,731	+				-0.1
2,849	+		GFF23	0.12	-0.5
2,949	-		GFF23	0.24	-0.3
3,363	+		GFF23	0.75	-0.3
3,364	-		GFF23	0.75	-1.6
3,592	-				+0.3
3,631	-				-0.4
3,651	-				+0.2
3,681	+				-0.4
3,740	+				-0.8
3,839	-				-0.9
3,957	+				+0.4
3,957	+				+0.0
3,958	-				-0.1
4,209	+		GFF25	0.21	-0.4
4,405	+		GFF25	0.48	+0.2
4,490	+		GFF25	0.59	-0.1