Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2298

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
85,043	+				+0.2
85,298	+		GFF2297	0.30	-1.3
85,323	+		GFF2297	0.33	-0.1
85,407	+		GFF2297	0.41	-0.1
85,557	+		GFF2297	0.56	+0.8
85,636	+		GFF2297	0.64	+0.4
85,636	+		GFF2297	0.64	+0.6
85,780	+		GFF2297	0.78	-0.0
86,378	-		GFF2298	0.36	-0.1
86,402	+		GFF2298	0.38	+1.0
86,402	+		GFF2298	0.38	+1.2
86,403	-		GFF2298	0.38	+0.5
86,403	-		GFF2298	0.38	+0.5
86,583	+		GFF2298	0.56	-0.0
86,583	+		GFF2298	0.56	+0.1
86,603	+		GFF2298	0.57	+0.1
86,729	-		GFF2298	0.70	-0.7
86,772	+		GFF2298	0.74	-0.3
86,773	-		GFF2298	0.74	-0.5
86,945	-				+0.3
87,288	+		GFF2299	0.24	+0.5
87,349	+		GFF2299	0.31	-0.1
87,510	-		GFF2299	0.50	-0.7
87,539	+		GFF2299	0.53	-0.5
87,542	+		GFF2299	0.53	-0.4
87,611	+		GFF2299	0.61	-1.9
87,687	+		GFF2299	0.70	-0.7
87,688	-		GFF2299	0.70	-0.1
87,713	+		GFF2299	0.73	-0.9
87,823	+		GFF2299	0.85	-0.1
87,827	+		GFF2299	0.86	-0.2
87,827	+		GFF2299	0.86	-0.3
87,836	+		GFF2299	0.87	+0.7
87,836	+		GFF2299	0.87	-0.9
87,837	-		GFF2299	0.87	-1.1
87,880	+				-0.6