Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2295

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
81,507	+		GFF2294	0.31	-1.0
81,507	+		GFF2294	0.31	+0.2
81,659	+		GFF2294	0.47	-0.6
81,659	+		GFF2294	0.47	-0.6
81,660	-		GFF2294	0.47	-0.3
81,662	+		GFF2294	0.47	-0.3
81,662	+		GFF2294	0.47	-0.5
81,666	+		GFF2294	0.47	+1.6
81,666	+		GFF2294	0.47	+0.9
81,667	-		GFF2294	0.48	+0.2
81,672	-		GFF2294	0.48	-0.8
81,705	-		GFF2294	0.52	+0.0
81,707	-		GFF2294	0.52	+0.3
81,707	-		GFF2294	0.52	-0.0
81,707	-		GFF2294	0.52	-0.2
81,848	+		GFF2294	0.66	+0.4
82,096	+				-0.1
82,097	-				+0.1
82,109	+				-0.5
82,157	+				+0.4
82,442	+				+0.1
82,477	-				-0.2
82,520	+				-0.5
82,583	-		GFF2295	0.10	+0.9
82,658	-		GFF2295	0.15	+0.1
82,727	-		GFF2295	0.20	-0.2
82,743	-		GFF2295	0.21	-0.6
82,795	+		GFF2295	0.24	-0.0
82,909	+		GFF2295	0.32	+0.1
82,909	+		GFF2295	0.32	-0.3
83,129	+		GFF2295	0.46	+0.1
83,130	-		GFF2295	0.46	+0.5
83,227	+		GFF2295	0.52	+0.6
83,230	+		GFF2295	0.52	-0.1
83,267	+		GFF2295	0.55	+1.5
83,268	-		GFF2295	0.55	-0.4
83,449	-		GFF2295	0.67	-0.3
83,821	+				-0.9
83,822	-				-0.2
83,842	+				-0.5
83,842	+				+0.4
83,842	+				-0.1
83,843	-				-0.2
83,843	-				-0.5
83,844	+				-0.1
83,844	+				-2.2
83,844	+				+0.3
83,845	-				+0.2
83,845	-				-0.2
83,897	+				-0.3
83,906	+				-0.1
83,906	+				-0.1
84,013	-				-0.7
84,044	+				-0.1
84,147	+		GFF2296	0.18	+0.5
84,209	+		GFF2296	0.24	+0.2
84,241	-		GFF2296	0.27	-0.1
84,243	+		GFF2296	0.28	+0.2
84,244	-		GFF2296	0.28	+0.6
84,355	-		GFF2296	0.38	-0.1
84,469	+		GFF2296	0.49	-0.3
84,841	-		GFF2296	0.85	-0.2
84,922	+				-1.0