Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2280

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
67,736	-		GFF2279	0.32	-0.2
67,924	+		GFF2279	0.45	-0.4
68,134	+		GFF2279	0.61	-0.2
68,135	-		GFF2279	0.61	+0.5
68,243	+		GFF2279	0.69	-0.4
68,515	+		GFF2279	0.88	-0.5
68,516	-		GFF2279	0.89	+0.1
68,516	-		GFF2279	0.89	-0.5
68,612	-				+0.8
68,612	-				-0.6
68,692	+				+0.1
68,769	-		GFF2280	0.14	-0.2
68,873	-		GFF2280	0.29	+0.6
69,063	-		GFF2280	0.56	+1.0
69,144	-		GFF2280	0.68	+0.5
69,186	-		GFF2280	0.74	+0.1
69,373	+				+0.1
69,395	+				-0.6
69,414	-				+0.5
69,426	+				-0.1
69,427	-				+0.1
69,437	-				-0.1
69,593	+		GFF2281	0.15	+0.0
69,593	+		GFF2281	0.15	+0.2
69,635	+		GFF2281	0.23	+0.7
69,651	-		GFF2281	0.26	-0.5
69,651	-		GFF2281	0.26	-0.2
69,705	-		GFF2281	0.37	+0.2
69,705	-		GFF2281	0.37	+0.1
69,705	-		GFF2281	0.37	+0.6
69,705	-		GFF2281	0.37	+0.0
69,879	+		GFF2281	0.72	+0.6
70,115	+				+0.0
70,115	+				-0.1
70,137	+				-0.0
70,137	+				+0.1
70,138	-				-0.3
70,166	+				-0.1
70,263	+		GFF2282	0.11	+1.6
70,281	-		GFF2282	0.13	+0.1