Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2253

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
42,740	+				+0.1
42,740	+				-0.2
42,742	+				-0.4
42,844	-				-1.0
42,993	+		GFF2252	0.25	-0.6
42,994	-		GFF2252	0.25	-1.0
42,994	-		GFF2252	0.25	-0.5
42,994	-		GFF2252	0.25	-1.0
43,061	+		GFF2252	0.33	-0.3
43,189	+		GFF2252	0.47	-0.3
43,190	-		GFF2252	0.47	+0.8
43,190	-		GFF2252	0.47	+0.2
43,190	-		GFF2252	0.47	-0.3
43,195	+		GFF2252	0.47	-0.0
43,252	+		GFF2252	0.54	+0.7
43,253	-		GFF2252	0.54	-0.4
43,270	+		GFF2252	0.56	+0.5
43,369	+		GFF2252	0.67	-0.1
43,370	-		GFF2252	0.67	+0.0
43,454	+		GFF2252	0.76	-0.6
43,474	-		GFF2252	0.78	-0.1
43,670	-				+0.0
43,670	-				+0.2
43,861	+				-0.2
43,891	+				+0.9
43,891	+				-0.5
43,892	-				-0.4
43,893	+				+0.5
43,893	+				-1.1
43,945	+				+0.0
43,946	-				+0.0
44,181	+		GFF2253	0.16	-0.0
44,212	+		GFF2253	0.17	+0.7
44,395	-		GFF2253	0.23	+0.4
44,636	-		GFF2253	0.31	+0.2
44,676	+		GFF2253	0.33	-0.2
44,688	+		GFF2253	0.33	-0.8
44,742	+		GFF2253	0.35	+0.1
44,742	+		GFF2253	0.35	+0.9
44,759	+		GFF2253	0.35	-0.8
44,760	-		GFF2253	0.35	-0.5
44,760	-		GFF2253	0.35	-0.0
44,834	+		GFF2253	0.38	+0.1
44,835	-		GFF2253	0.38	+0.2
45,001	-		GFF2253	0.43	+0.6
45,078	+		GFF2253	0.46	-0.0
45,122	+		GFF2253	0.47	-0.1
45,334	-		GFF2253	0.54	-2.4
45,363	-		GFF2253	0.55	+0.3
45,461	-		GFF2253	0.58	+0.0
45,464	-		GFF2253	0.58	-0.1
45,464	-		GFF2253	0.58	-0.8
45,556	-		GFF2253	0.61	-0.0
45,679	+		GFF2253	0.65	-0.1
45,715	-		GFF2253	0.67	-0.0
45,715	-		GFF2253	0.67	+0.3
45,736	-		GFF2253	0.67	-2.5
45,756	+		GFF2253	0.68	+0.4
45,757	-		GFF2253	0.68	-0.1
45,832	-		GFF2253	0.70	+0.1
45,832	-		GFF2253	0.70	+0.6
45,864	+		GFF2253	0.72	-0.0
45,865	-		GFF2253	0.72	-0.3
45,865	-		GFF2253	0.72	+0.0
45,908	+		GFF2253	0.73	+0.2
46,223	-		GFF2253	0.83	+0.2
46,331	-		GFF2253	0.87	+1.9
46,376	-		GFF2253	0.88	+0.5
46,429	+				-0.0
46,511	-				+0.4
46,620	+				-0.9
46,877	-				-0.5
46,885	-				+0.1
46,911	-				+0.0
46,911	-				-0.5
46,911	-				+0.1
46,911	-				+0.2
46,912	+				-0.4
46,913	-				-0.2
46,935	+				-0.2
46,935	+				-0.2
46,936	-				-0.4
46,937	+				+0.1
46,956	-				-0.3
47,065	+				-0.0
47,066	-				-1.1
47,066	-				-0.2
47,066	-				-0.6
47,294	+		GFF2254	0.34	-0.3
47,294	+		GFF2254	0.34	-1.6
47,295	-		GFF2254	0.34	+0.4
47,325	+		GFF2254	0.38	-0.2
47,433	+		GFF2254	0.53	+2.6
47,514	+		GFF2254	0.65	-0.9
47,591	-		GFF2254	0.76	-1.3
47,709	+				+0.1
47,731	+				-0.4