Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2146 and GFF2147 are separated by 103 nucleotides GFF2147 and GFF2148 are separated by 364 nucleotides GFF2148 and GFF2149 are separated by 413 nucleotides
GFF2146 - FIG01045534: hypothetical protein, at 37,423 to 37,689
GFF2146
GFF2147 - probable exported protein YPO3518, at 37,793 to 38,056
GFF2147
GFF2148 - Arginine pathway regulatory protein ArgR, repressor of arg regulon, at 38,421 to 38,891
GFF2148
GFF2149 - Malate dehydrogenase (EC 1.1.1.37), at 39,305 to 40,243
GFF2149
Position (kb) 38
39 Strain fitness (log2 ratio) -2
-1
0
1
2 at 37.428 kb on + strand at 37.429 kb on - strand at 37.431 kb on - strand at 37.455 kb on + strand, within GFF2146 at 37.455 kb on + strand, within GFF2146 at 37.456 kb on - strand, within GFF2146 at 37.488 kb on + strand, within GFF2146 at 37.488 kb on + strand, within GFF2146 at 37.489 kb on - strand, within GFF2146 at 37.489 kb on - strand, within GFF2146 at 37.489 kb on - strand, within GFF2146 at 37.545 kb on + strand, within GFF2146 at 37.706 kb on - strand at 37.708 kb on - strand at 37.726 kb on + strand at 37.772 kb on - strand at 37.774 kb on - strand at 38.028 kb on - strand, within GFF2147 at 38.028 kb on - strand, within GFF2147 at 38.028 kb on - strand, within GFF2147 at 38.028 kb on - strand, within GFF2147 at 38.502 kb on - strand, within GFF2148 at 38.505 kb on - strand, within GFF2148 at 38.532 kb on - strand, within GFF2148 at 38.862 kb on + strand at 38.891 kb on + strand at 38.905 kb on + strand at 38.926 kb on - strand at 38.982 kb on - strand at 39.103 kb on + strand at 39.103 kb on + strand at 39.106 kb on + strand at 39.111 kb on + strand at 39.113 kb on + strand at 39.114 kb on - strand at 39.164 kb on - strand at 39.180 kb on + strand at 39.181 kb on - strand at 39.248 kb on - strand at 39.278 kb on - strand at 39.281 kb on + strand at 39.282 kb on - strand at 39.290 kb on - strand at 39.293 kb on - strand at 39.357 kb on + strand at 39.520 kb on - strand, within GFF2149 at 39.577 kb on + strand, within GFF2149 at 39.769 kb on + strand, within GFF2149
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 37,428 + +0.3 37,429 - +0.1 37,431 - -0.2 37,455 + GFF2146 0.12 +0.3 37,455 + GFF2146 0.12 +0.8 37,456 - GFF2146 0.12 -0.1 37,488 + GFF2146 0.24 +0.1 37,488 + GFF2146 0.24 -0.2 37,489 - GFF2146 0.25 -0.5 37,489 - GFF2146 0.25 +0.3 37,489 - GFF2146 0.25 +0.1 37,545 + GFF2146 0.46 +1.3 37,706 - +0.1 37,708 - -0.1 37,726 + +0.1 37,772 - +0.1 37,774 - -0.3 38,028 - GFF2147 0.89 +0.1 38,028 - GFF2147 0.89 -0.5 38,028 - GFF2147 0.89 +0.1 38,028 - GFF2147 0.89 -2.0 38,502 - GFF2148 0.17 -0.1 38,505 - GFF2148 0.18 -0.9 38,532 - GFF2148 0.24 -1.3 38,862 + +0.9 38,891 + +0.8 38,905 + -0.4 38,926 - -1.1 38,982 - -0.5 39,103 + -0.1 39,103 + -0.2 39,106 + -0.4 39,111 + +2.1 39,113 + -0.1 39,114 - +0.4 39,164 - -0.4 39,180 + +0.5 39,181 - -0.3 39,248 - -0.2 39,278 - -0.7 39,281 + -0.4 39,282 - -1.6 39,290 - -0.9 39,293 - -0.4 39,357 + -1.4 39,520 - GFF2149 0.23 -1.5 39,577 + GFF2149 0.29 -1.0 39,769 + GFF2149 0.49 -0.1
Or see this region's nucleotide sequence