Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2140

Experiment: Acanthamoeba sp., muxed culture-1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2139 and GFF2140 are separated by 144 nucleotidesGFF2140 and GFF2141 are separated by 122 nucleotides GFF2139 - FIG005080: Possible exported protein, at 27,179 to 30,979 GFF2139 GFF2140 - TldD protein, part of TldE/TldD proteolytic complex, at 31,124 to 32,569 GFF2140 GFF2141 - LysR family transcriptional regulator QseA, at 32,692 to 33,603 GFF2141 Position (kb) 31 32 33Strain fitness (log2 ratio) -2 -1 0 1at 30.139 kb on + strand, within GFF2139at 30.211 kb on + strand, within GFF2139at 30.212 kb on - strand, within GFF2139at 30.358 kb on + strand, within GFF2139at 30.359 kb on - strand, within GFF2139at 30.359 kb on - strand, within GFF2139at 30.361 kb on + strand, within GFF2139at 30.361 kb on + strand, within GFF2139at 30.426 kb on + strand, within GFF2139at 30.553 kb on - strand, within GFF2139at 30.587 kb on - strand, within GFF2139at 30.611 kb on - strandat 30.640 kb on + strandat 30.640 kb on + strandat 30.640 kb on + strandat 30.647 kb on - strandat 30.676 kb on - strandat 31.014 kb on - strandat 31.017 kb on + strandat 31.017 kb on + strandat 31.018 kb on - strandat 31.061 kb on - strandat 31.069 kb on - strandat 31.113 kb on + strandat 31.141 kb on - strandat 31.141 kb on - strandat 31.289 kb on - strand, within GFF2140at 31.301 kb on + strand, within GFF2140at 31.302 kb on - strand, within GFF2140at 31.303 kb on + strand, within GFF2140at 31.374 kb on + strand, within GFF2140at 31.608 kb on + strand, within GFF2140at 31.608 kb on + strand, within GFF2140at 31.618 kb on - strand, within GFF2140at 31.751 kb on + strand, within GFF2140at 31.962 kb on + strand, within GFF2140at 31.962 kb on + strand, within GFF2140at 31.963 kb on - strand, within GFF2140at 32.053 kb on + strand, within GFF2140at 32.082 kb on - strand, within GFF2140at 32.117 kb on + strand, within GFF2140at 32.222 kb on + strand, within GFF2140at 32.222 kb on + strand, within GFF2140at 32.222 kb on + strand, within GFF2140at 32.222 kb on + strand, within GFF2140at 32.223 kb on - strand, within GFF2140at 32.223 kb on - strand, within GFF2140at 32.223 kb on - strand, within GFF2140at 32.223 kb on - strand, within GFF2140at 32.224 kb on + strand, within GFF2140at 32.224 kb on + strand, within GFF2140at 32.224 kb on + strand, within GFF2140at 32.225 kb on - strand, within GFF2140at 32.225 kb on - strand, within GFF2140at 32.282 kb on + strand, within GFF2140at 32.283 kb on - strand, within GFF2140at 32.283 kb on - strand, within GFF2140at 32.283 kb on - strand, within GFF2140at 32.283 kb on - strand, within GFF2140at 32.283 kb on - strand, within GFF2140at 32.283 kb on - strand, within GFF2140at 32.354 kb on + strand, within GFF2140at 32.458 kb on + strandat 32.910 kb on - strand, within GFF2141at 32.961 kb on + strand, within GFF2141at 33.046 kb on - strand, within GFF2141at 33.047 kb on + strand, within GFF2141at 33.345 kb on + strand, within GFF2141at 33.345 kb on + strand, within GFF2141at 33.346 kb on - strand, within GFF2141at 33.565 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1
remove
30,139 + GFF2139 0.78 -0.5
30,211 + GFF2139 0.80 +0.1
30,212 - GFF2139 0.80 +0.0
30,358 + GFF2139 0.84 -0.5
30,359 - GFF2139 0.84 -0.9
30,359 - GFF2139 0.84 -0.0
30,361 + GFF2139 0.84 -0.4
30,361 + GFF2139 0.84 -0.8
30,426 + GFF2139 0.85 +1.1
30,553 - GFF2139 0.89 +0.2
30,587 - GFF2139 0.90 -2.0
30,611 - +0.4
30,640 + -0.9
30,640 + +1.5
30,640 + -0.0
30,647 - -0.5
30,676 - +0.3
31,014 - -0.7
31,017 + +0.1
31,017 + +0.0
31,018 - -0.1
31,061 - +0.3
31,069 - +0.1
31,113 + -0.4
31,141 - +0.4
31,141 - +0.3
31,289 - GFF2140 0.11 +0.0
31,301 + GFF2140 0.12 -0.3
31,302 - GFF2140 0.12 -0.3
31,303 + GFF2140 0.12 +0.6
31,374 + GFF2140 0.17 -0.0
31,608 + GFF2140 0.33 +1.0
31,608 + GFF2140 0.33 +0.4
31,618 - GFF2140 0.34 -0.5
31,751 + GFF2140 0.43 -0.6
31,962 + GFF2140 0.58 -1.1
31,962 + GFF2140 0.58 +0.1
31,963 - GFF2140 0.58 +0.9
32,053 + GFF2140 0.64 -0.1
32,082 - GFF2140 0.66 -0.5
32,117 + GFF2140 0.69 -0.9
32,222 + GFF2140 0.76 -0.1
32,222 + GFF2140 0.76 +0.0
32,222 + GFF2140 0.76 +0.6
32,222 + GFF2140 0.76 +0.3
32,223 - GFF2140 0.76 -0.2
32,223 - GFF2140 0.76 +0.5
32,223 - GFF2140 0.76 -0.1
32,223 - GFF2140 0.76 +0.0
32,224 + GFF2140 0.76 -0.2
32,224 + GFF2140 0.76 -2.1
32,224 + GFF2140 0.76 -0.2
32,225 - GFF2140 0.76 -0.3
32,225 - GFF2140 0.76 -0.2
32,282 + GFF2140 0.80 -0.6
32,283 - GFF2140 0.80 -0.4
32,283 - GFF2140 0.80 -0.2
32,283 - GFF2140 0.80 +0.0
32,283 - GFF2140 0.80 +0.1
32,283 - GFF2140 0.80 +0.1
32,283 - GFF2140 0.80 -1.0
32,354 + GFF2140 0.85 -0.6
32,458 + +1.0
32,910 - GFF2141 0.24 -0.2
32,961 + GFF2141 0.29 +0.1
33,046 - GFF2141 0.39 -0.4
33,047 + GFF2141 0.39 +0.1
33,345 + GFF2141 0.72 +0.4
33,345 + GFF2141 0.72 -0.6
33,346 - GFF2141 0.72 +1.0
33,565 - +0.1

Or see this region's nucleotide sequence