Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2136 and GFF2137 are separated by 8 nucleotides GFF2137 and GFF2138 overlap by 11 nucleotides GFF2138 and GFF2139 are separated by 106 nucleotides
GFF2136 - Rod shape-determining protein MreD, at 24,520 to 25,011
GFF2136
GFF2137 - Septum formation protein Maf, at 25,020 to 25,613
GFF2137
GFF2138 - Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-), at 25,603 to 27,072
GFF2138
GFF2139 - FIG005080: Possible exported protein, at 27,179 to 30,979
GFF2139
Position (kb) 25
26
27
28 Strain fitness (log2 ratio) -1
0
1 at 25.149 kb on + strand, within GFF2137 at 25.317 kb on - strand, within GFF2137 at 25.317 kb on - strand, within GFF2137 at 25.419 kb on - strand, within GFF2137 at 25.455 kb on - strand, within GFF2137 at 25.507 kb on + strand, within GFF2137 at 25.507 kb on + strand, within GFF2137 at 25.508 kb on - strand, within GFF2137 at 25.519 kb on - strand, within GFF2137 at 25.519 kb on - strand, within GFF2137 at 25.555 kb on - strand at 25.589 kb on + strand at 25.623 kb on - strand at 25.686 kb on + strand at 25.727 kb on - strand at 25.727 kb on - strand at 25.779 kb on + strand, within GFF2138 at 25.821 kb on + strand, within GFF2138 at 25.866 kb on + strand, within GFF2138 at 26.107 kb on - strand, within GFF2138 at 26.107 kb on - strand, within GFF2138 at 26.190 kb on - strand, within GFF2138 at 26.318 kb on - strand, within GFF2138 at 26.318 kb on - strand, within GFF2138 at 26.347 kb on + strand, within GFF2138 at 26.367 kb on + strand, within GFF2138 at 26.380 kb on + strand, within GFF2138 at 26.381 kb on - strand, within GFF2138 at 26.449 kb on - strand, within GFF2138 at 26.449 kb on - strand, within GFF2138 at 26.511 kb on - strand, within GFF2138 at 26.511 kb on - strand, within GFF2138 at 26.514 kb on + strand, within GFF2138 at 26.514 kb on + strand, within GFF2138 at 26.545 kb on - strand, within GFF2138 at 26.658 kb on + strand, within GFF2138 at 26.731 kb on - strand, within GFF2138 at 26.888 kb on + strand, within GFF2138 at 26.905 kb on + strand, within GFF2138 at 27.039 kb on + strand at 27.094 kb on - strand at 27.394 kb on + strand at 27.784 kb on - strand, within GFF2139
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 25,149 + GFF2137 0.22 +0.5 25,317 - GFF2137 0.50 -0.2 25,317 - GFF2137 0.50 -0.0 25,419 - GFF2137 0.67 -0.1 25,455 - GFF2137 0.73 -0.1 25,507 + GFF2137 0.82 +0.1 25,507 + GFF2137 0.82 +0.3 25,508 - GFF2137 0.82 -0.2 25,519 - GFF2137 0.84 -0.2 25,519 - GFF2137 0.84 +1.0 25,555 - -0.8 25,589 + +0.3 25,623 - -0.9 25,686 + -0.9 25,727 - -1.3 25,727 - +0.2 25,779 + GFF2138 0.12 -0.1 25,821 + GFF2138 0.15 -0.7 25,866 + GFF2138 0.18 -1.2 26,107 - GFF2138 0.34 -0.2 26,107 - GFF2138 0.34 +0.2 26,190 - GFF2138 0.40 +0.8 26,318 - GFF2138 0.49 -1.0 26,318 - GFF2138 0.49 -0.0 26,347 + GFF2138 0.51 -0.9 26,367 + GFF2138 0.52 -0.6 26,380 + GFF2138 0.53 -1.7 26,381 - GFF2138 0.53 -1.1 26,449 - GFF2138 0.58 -0.9 26,449 - GFF2138 0.58 -0.9 26,511 - GFF2138 0.62 -1.7 26,511 - GFF2138 0.62 -1.3 26,514 + GFF2138 0.62 -0.1 26,514 + GFF2138 0.62 -0.3 26,545 - GFF2138 0.64 -0.4 26,658 + GFF2138 0.72 -1.2 26,731 - GFF2138 0.77 -0.1 26,888 + GFF2138 0.87 +0.9 26,905 + GFF2138 0.89 -0.5 27,039 + -0.3 27,094 - -0.5 27,394 + -0.1 27,784 - GFF2139 0.16 +1.6
Or see this region's nucleotide sequence