Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2125

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
11,327	+		GFF2124	0.76	-0.4
11,369	+		GFF2124	0.81	+0.2
11,396	+		GFF2124	0.84	+0.1
11,397	-		GFF2124	0.84	+0.6
11,493	-				+0.8
11,561	-				+0.3
11,667	-				+0.0
11,689	+				+0.3
11,693	-				+0.5
11,907	+				+0.7
11,913	-				+0.1
12,106	+				-0.2
12,109	+				+0.2
12,109	+				-0.2
12,110	-				+0.2
12,110	-				-0.1
12,110	-				+0.2
12,113	+				-2.0
12,149	+				+0.6
12,150	-				-0.3
12,310	+				-0.1
12,419	+		GFF2125	0.13	-0.0
12,420	-		GFF2125	0.13	-0.3
12,504	-		GFF2125	0.22	+0.0
12,553	+		GFF2125	0.28	-0.5
12,612	-		GFF2125	0.35	-0.6
12,751	-		GFF2125	0.51	-1.3
12,887	+		GFF2125	0.67	-0.3
13,317	+				-0.5
13,328	-				+0.5
13,328	-				-0.1
13,348	-		GFF2126	0.10	+0.0
13,349	+		GFF2126	0.10	-0.6
13,349	+		GFF2126	0.10	-1.6
13,529	+		GFF2126	0.23	+0.5
13,534	+		GFF2126	0.23	-0.3
13,535	-		GFF2126	0.23	+0.3
13,549	+		GFF2126	0.24	-0.1
13,550	-		GFF2126	0.24	+0.3
13,550	-		GFF2126	0.24	+0.1
13,550	-		GFF2126	0.24	+1.0
13,826	-		GFF2126	0.43	-0.1
13,832	-		GFF2126	0.43	+0.2
13,834	+		GFF2126	0.44	+0.1
13,835	-		GFF2126	0.44	-0.2
13,855	+		GFF2126	0.45	-0.6
13,865	-		GFF2126	0.46	+0.1
13,939	+		GFF2126	0.51	+0.3
13,955	+		GFF2126	0.52	-0.1
13,956	-		GFF2126	0.52	-0.3
13,956	-		GFF2126	0.52	+0.8
14,138	-		GFF2126	0.64	+0.2
14,139	+		GFF2126	0.65	-0.8