Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2123

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
9,653	-		GFF2122	0.30	-1.0
9,702	-		GFF2122	0.35	-0.1
9,716	+		GFF2122	0.37	+0.0
9,717	-		GFF2122	0.37	+0.4
9,767	+		GFF2122	0.42	-0.2
9,897	-		GFF2122	0.57	+0.5
9,900	+		GFF2122	0.58	+0.1
9,900	+		GFF2122	0.58	+0.3
9,936	+		GFF2122	0.62	-0.6
9,937	-		GFF2122	0.62	+1.2
9,937	-		GFF2122	0.62	-0.2
9,941	+		GFF2122	0.62	+0.4
9,941	+		GFF2122	0.62	+0.0
9,999	-		GFF2122	0.69	+0.3
10,028	+		GFF2122	0.72	-0.2
10,029	-		GFF2122	0.72	-0.6
10,080	-		GFF2122	0.78	-0.0
10,507	-		GFF2123	0.49	+0.1
10,629	-				+1.3
10,809	-		GFF2124	0.15	+1.0
11,004	-		GFF2124	0.38	+0.5
11,037	-		GFF2124	0.42	+0.5
11,081	+		GFF2124	0.47	+1.9
11,194	-		GFF2124	0.60	+0.1
11,202	-		GFF2124	0.61	+0.2
11,280	-		GFF2124	0.71	-0.2
11,290	-		GFF2124	0.72	+1.1
11,327	+		GFF2124	0.76	-0.4
11,369	+		GFF2124	0.81	+0.2
11,396	+		GFF2124	0.84	+0.1
11,397	-		GFF2124	0.84	+0.6
11,493	-				+0.8
11,561	-				+0.3