Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2071 and GFF2072 are separated by 9 nucleotides GFF2072 and GFF2073 are separated by 18 nucleotides GFF2073 and GFF2074 are separated by 11 nucleotides
GFF2071 - Ethanolamine utilization polyhedral-body-like protein EutL, at 33,686 to 34,345
GFF2071
GFF2072 - Ethanolamine ammonia-lyase light chain (EC 4.3.1.7), at 34,355 to 35,251
GFF2072
GFF2073 - Ethanolamine ammonia-lyase heavy chain (EC 4.3.1.7), at 35,270 to 36,631
GFF2073
GFF2074 - Ethanolamine utilization protein EutA, at 36,643 to 38,046
GFF2074
Position (kb) 35
36
37 Strain fitness (log2 ratio) -2
-1
0
1
2 at 34.710 kb on + strand, within GFF2072 at 34.710 kb on + strand, within GFF2072 at 34.711 kb on - strand, within GFF2072 at 34.754 kb on + strand, within GFF2072 at 34.754 kb on + strand, within GFF2072 at 34.846 kb on - strand, within GFF2072 at 35.222 kb on + strand at 35.421 kb on + strand, within GFF2073 at 35.422 kb on - strand, within GFF2073 at 35.464 kb on - strand, within GFF2073 at 35.464 kb on - strand, within GFF2073 at 35.581 kb on + strand, within GFF2073 at 35.626 kb on - strand, within GFF2073 at 35.626 kb on - strand, within GFF2073 at 35.701 kb on + strand, within GFF2073 at 35.701 kb on + strand, within GFF2073 at 35.702 kb on - strand, within GFF2073 at 35.778 kb on + strand, within GFF2073 at 35.779 kb on - strand, within GFF2073 at 36.115 kb on + strand, within GFF2073 at 36.122 kb on + strand, within GFF2073 at 36.336 kb on + strand, within GFF2073 at 36.590 kb on - strand at 36.719 kb on + strand at 36.720 kb on - strand at 36.720 kb on - strand at 36.720 kb on - strand at 36.773 kb on - strand at 36.787 kb on + strand, within GFF2074 at 36.788 kb on - strand, within GFF2074 at 36.788 kb on - strand, within GFF2074 at 37.069 kb on - strand, within GFF2074 at 37.072 kb on - strand, within GFF2074 at 37.092 kb on + strand, within GFF2074 at 37.242 kb on - strand, within GFF2074 at 37.285 kb on - strand, within GFF2074 at 37.285 kb on - strand, within GFF2074 at 37.569 kb on - strand, within GFF2074
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 34,710 + GFF2072 0.40 -0.3 34,710 + GFF2072 0.40 +0.6 34,711 - GFF2072 0.40 +2.6 34,754 + GFF2072 0.44 +2.0 34,754 + GFF2072 0.44 +0.2 34,846 - GFF2072 0.55 -0.4 35,222 + -0.2 35,421 + GFF2073 0.11 +0.2 35,422 - GFF2073 0.11 +0.1 35,464 - GFF2073 0.14 +0.0 35,464 - GFF2073 0.14 +0.9 35,581 + GFF2073 0.23 -0.2 35,626 - GFF2073 0.26 +0.5 35,626 - GFF2073 0.26 -0.2 35,701 + GFF2073 0.32 +0.3 35,701 + GFF2073 0.32 -0.4 35,702 - GFF2073 0.32 +0.2 35,778 + GFF2073 0.37 -0.4 35,779 - GFF2073 0.37 -0.1 36,115 + GFF2073 0.62 +0.9 36,122 + GFF2073 0.63 +0.2 36,336 + GFF2073 0.78 +0.5 36,590 - -0.3 36,719 + +1.0 36,720 - -0.6 36,720 - +0.5 36,720 - +0.4 36,773 - -0.7 36,787 + GFF2074 0.10 -1.8 36,788 - GFF2074 0.10 +0.7 36,788 - GFF2074 0.10 -0.5 37,069 - GFF2074 0.30 -0.2 37,072 - GFF2074 0.31 -0.1 37,092 + GFF2074 0.32 -0.1 37,242 - GFF2074 0.43 +0.3 37,285 - GFF2074 0.46 -0.4 37,285 - GFF2074 0.46 +0.5 37,569 - GFF2074 0.66 -0.5
Or see this region's nucleotide sequence