Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1880

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
71,299	-		GFF1879	0.38	-1.5
71,365	-		GFF1879	0.42	-1.9
71,488	-		GFF1879	0.51	-1.5
71,513	+		GFF1879	0.53	-1.1
71,616	+		GFF1879	0.60	-0.6
71,616	+		GFF1879	0.60	-1.2
71,673	-		GFF1879	0.64	-1.3
71,673	-		GFF1879	0.64	-2.2
71,729	+		GFF1879	0.67	-2.2
71,730	-		GFF1879	0.67	-0.6
71,888	+		GFF1879	0.78	+0.4
71,889	-		GFF1879	0.78	-1.7
71,979	-		GFF1879	0.84	-1.5
72,225	+				-1.3
72,226	-				-0.5
72,300	-				-1.2
72,342	+				-0.8
72,411	-		GFF1880	0.13	-0.7
72,439	+		GFF1880	0.15	-1.2
72,452	-		GFF1880	0.16	-2.5
72,452	-		GFF1880	0.16	-1.0
72,624	+		GFF1880	0.27	-1.6
72,640	-		GFF1880	0.28	-0.5
72,653	+		GFF1880	0.29	-1.7
72,654	-		GFF1880	0.29	-0.2
72,749	+		GFF1880	0.35	-1.4
72,790	-		GFF1880	0.38	-2.4
72,790	-		GFF1880	0.38	-0.5
72,791	+		GFF1880	0.38	-2.7
72,792	-		GFF1880	0.38	-0.5
72,871	-		GFF1880	0.43	-2.2
72,871	-		GFF1880	0.43	-1.7
73,212	-		GFF1880	0.65	-1.1
73,474	+		GFF1880	0.83	-1.3
73,506	+		GFF1880	0.85	-1.0
73,506	+		GFF1880	0.85	-0.0
73,736	-				-4.0
73,745	-				-2.0
73,887	+				-2.0
73,887	+				-1.7
73,888	-				-0.6
73,888	-				-0.1
73,896	-				-0.1
74,011	+				-1.3
74,115	+				-2.4
74,116	-				-0.9
74,116	-				-0.2
74,116	-				-2.6
74,128	-				-1.1
74,252	+		GFF1881	0.11	-1.0
74,253	-		GFF1881	0.11	-0.7
74,263	-		GFF1881	0.11	-0.3
74,289	+		GFF1881	0.13	-2.6
74,290	-		GFF1881	0.13	-2.0