Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1813 and GFF1814 are separated by 55 nucleotides GFF1814 and GFF1815 are separated by 76 nucleotides GFF1815 and GFF1816 overlap by 1 nucleotides
GFF1813 - Cnu protein, at 38,035 to 38,250
GFF1813
GFF1814 - Putative inner membrane protein, at 38,306 to 38,779
GFF1814
GFF1815 - Electron transport complex protein RnfA, at 38,856 to 39,437
GFF1815
GFF1816 - Electron transport complex protein RnfB, at 39,437 to 40,015
GFF1816
Position (kb) 38
39
40 Strain fitness (log2 ratio) -2
-1
0
1 at 37.919 kb on - strand at 38.149 kb on - strand, within GFF1813 at 38.153 kb on - strand, within GFF1813 at 38.285 kb on - strand at 38.338 kb on + strand at 38.345 kb on - strand at 38.546 kb on + strand, within GFF1814 at 38.551 kb on + strand, within GFF1814 at 38.606 kb on + strand, within GFF1814 at 38.612 kb on - strand, within GFF1814 at 38.786 kb on + strand at 38.824 kb on + strand at 38.825 kb on - strand at 38.865 kb on + strand at 39.047 kb on + strand, within GFF1815 at 39.175 kb on + strand, within GFF1815 at 39.192 kb on - strand, within GFF1815 at 39.192 kb on - strand, within GFF1815 at 39.436 kb on - strand at 39.753 kb on + strand, within GFF1816 at 39.753 kb on + strand, within GFF1816 at 39.753 kb on + strand, within GFF1816 at 39.757 kb on + strand, within GFF1816 at 39.757 kb on + strand, within GFF1816 at 39.877 kb on + strand, within GFF1816 at 39.886 kb on + strand, within GFF1816 at 40.139 kb on + strand at 40.281 kb on - strand at 40.325 kb on - strand at 40.325 kb on - strand at 40.330 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 37,919 - +0.2 38,149 - GFF1813 0.53 +0.5 38,153 - GFF1813 0.55 +0.5 38,285 - -0.5 38,338 + +0.7 38,345 - +0.3 38,546 + GFF1814 0.51 +0.0 38,551 + GFF1814 0.52 -0.0 38,606 + GFF1814 0.63 +0.2 38,612 - GFF1814 0.65 +0.5 38,786 + +1.2 38,824 + +0.0 38,825 - +0.4 38,865 + -0.4 39,047 + GFF1815 0.33 -0.3 39,175 + GFF1815 0.55 +0.2 39,192 - GFF1815 0.58 -1.8 39,192 - GFF1815 0.58 -2.4 39,436 - +0.2 39,753 + GFF1816 0.55 -1.6 39,753 + GFF1816 0.55 -0.9 39,753 + GFF1816 0.55 -1.0 39,757 + GFF1816 0.55 -1.2 39,757 + GFF1816 0.55 -0.2 39,877 + GFF1816 0.76 +0.0 39,886 + GFF1816 0.78 -1.3 40,139 + +0.0 40,281 - -1.3 40,325 - -1.0 40,325 - -1.1 40,330 + -0.1
Or see this region's nucleotide sequence