Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1734 and GFF1735 are separated by 135 nucleotides GFF1735 and GFF1736 overlap by 1 nucleotides GFF1736 and GFF1737 are separated by 50 nucleotides
GFF1734 - Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1), at 35,214 to 36,254
GFF1734
GFF1735 - Phosphate transport system permease protein PstC (TC 3.A.1.7.1), at 36,390 to 37,349
GFF1735
GFF1736 - Phosphate transport system permease protein PstA (TC 3.A.1.7.1), at 37,349 to 38,239
GFF1736
GFF1737 - Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1), at 38,290 to 39,099
GFF1737
Position (kb) 36
37
38 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 35.730 kb on + strand, within GFF1734 at 35.780 kb on + strand, within GFF1734 at 35.839 kb on + strand, within GFF1734 at 36.059 kb on + strand, within GFF1734 at 36.129 kb on + strand, within GFF1734 at 36.165 kb on + strand at 36.481 kb on + strand at 36.566 kb on + strand, within GFF1735 at 36.594 kb on + strand, within GFF1735 at 36.788 kb on + strand, within GFF1735 at 36.939 kb on + strand, within GFF1735 at 36.939 kb on + strand, within GFF1735 at 36.939 kb on + strand, within GFF1735 at 37.016 kb on + strand, within GFF1735 at 37.019 kb on + strand, within GFF1735 at 37.082 kb on + strand, within GFF1735 at 37.146 kb on + strand, within GFF1735 at 37.146 kb on + strand, within GFF1735 at 37.170 kb on + strand, within GFF1735 at 37.170 kb on + strand, within GFF1735 at 37.316 kb on + strand at 37.632 kb on + strand, within GFF1736 at 37.667 kb on + strand, within GFF1736 at 38.184 kb on + strand at 38.248 kb on + strand at 38.248 kb on + strand at 38.257 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 35,730 + GFF1734 0.50 -0.5 35,780 + GFF1734 0.54 -0.9 35,839 + GFF1734 0.60 -0.1 36,059 + GFF1734 0.81 -1.5 36,129 + GFF1734 0.88 -1.0 36,165 + -0.8 36,481 + -5.1 36,566 + GFF1735 0.18 -3.0 36,594 + GFF1735 0.21 -1.0 36,788 + GFF1735 0.41 -1.7 36,939 + GFF1735 0.57 -1.4 36,939 + GFF1735 0.57 -3.4 36,939 + GFF1735 0.57 -1.0 37,016 + GFF1735 0.65 -3.2 37,019 + GFF1735 0.66 -1.2 37,082 + GFF1735 0.72 -0.4 37,146 + GFF1735 0.79 +0.1 37,146 + GFF1735 0.79 +0.4 37,170 + GFF1735 0.81 -0.9 37,170 + GFF1735 0.81 -0.4 37,316 + -0.0 37,632 + GFF1736 0.32 -1.7 37,667 + GFF1736 0.36 +1.0 38,184 + -0.5 38,248 + -0.3 38,248 + +0.8 38,257 + +0.2
Or see this region's nucleotide sequence