Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1711 and GFF1712 overlap by 7 nucleotides GFF1712 and GFF1713 are separated by 4 nucleotides
GFF1711 - Putative regulator protein, at 10,593 to 12,089
GFF1711
GFF1712 - FIG00637882: hypothetical protein, at 12,083 to 13,534
GFF1712
GFF1713 - Aspartate--ammonia ligase (EC 6.3.1.1), at 13,539 to 14,531
GFF1713
Position (kb) 12
13
14 Strain fitness (log2 ratio) -1
0
1 at 11.226 kb on + strand, within GFF1711 at 11.291 kb on + strand, within GFF1711 at 11.292 kb on - strand, within GFF1711 at 11.313 kb on - strand, within GFF1711 at 11.332 kb on - strand, within GFF1711 at 11.424 kb on - strand, within GFF1711 at 11.588 kb on + strand, within GFF1711 at 11.621 kb on + strand, within GFF1711 at 11.622 kb on - strand, within GFF1711 at 11.643 kb on + strand, within GFF1711 at 11.644 kb on - strand, within GFF1711 at 11.684 kb on - strand, within GFF1711 at 11.715 kb on - strand, within GFF1711 at 11.732 kb on + strand, within GFF1711 at 11.873 kb on - strand, within GFF1711 at 11.880 kb on - strand, within GFF1711 at 11.915 kb on + strand, within GFF1711 at 11.976 kb on - strand at 12.055 kb on + strand at 12.056 kb on - strand at 12.056 kb on - strand at 12.106 kb on + strand at 12.106 kb on + strand at 12.107 kb on - strand at 12.311 kb on + strand, within GFF1712 at 12.399 kb on - strand, within GFF1712 at 12.436 kb on + strand, within GFF1712 at 12.511 kb on - strand, within GFF1712 at 12.522 kb on + strand, within GFF1712 at 12.523 kb on - strand, within GFF1712 at 12.613 kb on + strand, within GFF1712 at 12.638 kb on - strand, within GFF1712 at 12.655 kb on + strand, within GFF1712 at 12.669 kb on - strand, within GFF1712 at 12.718 kb on - strand, within GFF1712 at 12.862 kb on + strand, within GFF1712 at 12.863 kb on - strand, within GFF1712 at 13.049 kb on - strand, within GFF1712 at 13.049 kb on - strand, within GFF1712 at 13.063 kb on + strand, within GFF1712 at 13.087 kb on + strand, within GFF1712 at 13.087 kb on + strand, within GFF1712 at 13.159 kb on + strand, within GFF1712 at 13.163 kb on - strand, within GFF1712 at 13.478 kb on - strand at 13.604 kb on + strand at 13.605 kb on - strand at 13.879 kb on + strand, within GFF1713 at 13.879 kb on + strand, within GFF1713 at 13.880 kb on - strand, within GFF1713 at 14.076 kb on - strand, within GFF1713 at 14.099 kb on + strand, within GFF1713 at 14.114 kb on + strand, within GFF1713 at 14.195 kb on - strand, within GFF1713 at 14.254 kb on + strand, within GFF1713 at 14.393 kb on + strand, within GFF1713 at 14.393 kb on + strand, within GFF1713 at 14.403 kb on - strand, within GFF1713
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 11,226 + GFF1711 0.42 +0.6 11,291 + GFF1711 0.47 +0.7 11,292 - GFF1711 0.47 +0.4 11,313 - GFF1711 0.48 -0.5 11,332 - GFF1711 0.49 -0.1 11,424 - GFF1711 0.56 -0.5 11,588 + GFF1711 0.66 +0.0 11,621 + GFF1711 0.69 -0.7 11,622 - GFF1711 0.69 +0.2 11,643 + GFF1711 0.70 -1.5 11,644 - GFF1711 0.70 +0.0 11,684 - GFF1711 0.73 -0.3 11,715 - GFF1711 0.75 -0.8 11,732 + GFF1711 0.76 +0.0 11,873 - GFF1711 0.86 +0.4 11,880 - GFF1711 0.86 +0.4 11,915 + GFF1711 0.88 +0.4 11,976 - -0.0 12,055 + +0.2 12,056 - -0.2 12,056 - -0.3 12,106 + +0.1 12,106 + +0.4 12,107 - +0.5 12,311 + GFF1712 0.16 +0.4 12,399 - GFF1712 0.22 +0.0 12,436 + GFF1712 0.24 +0.0 12,511 - GFF1712 0.29 +0.7 12,522 + GFF1712 0.30 +0.2 12,523 - GFF1712 0.30 -0.2 12,613 + GFF1712 0.37 +0.1 12,638 - GFF1712 0.38 +0.2 12,655 + GFF1712 0.39 +0.1 12,669 - GFF1712 0.40 -0.1 12,718 - GFF1712 0.44 -0.1 12,862 + GFF1712 0.54 +0.1 12,863 - GFF1712 0.54 -0.0 13,049 - GFF1712 0.67 +0.4 13,049 - GFF1712 0.67 -0.0 13,063 + GFF1712 0.67 -0.3 13,087 + GFF1712 0.69 +0.1 13,087 + GFF1712 0.69 +0.7 13,159 + GFF1712 0.74 +0.8 13,163 - GFF1712 0.74 +0.1 13,478 - -0.2 13,604 + +1.1 13,605 - +0.1 13,879 + GFF1713 0.34 -0.0 13,879 + GFF1713 0.34 +0.0 13,880 - GFF1713 0.34 -1.5 14,076 - GFF1713 0.54 -0.3 14,099 + GFF1713 0.56 -0.6 14,114 + GFF1713 0.58 +0.6 14,195 - GFF1713 0.66 -0.1 14,254 + GFF1713 0.72 +0.6 14,393 + GFF1713 0.86 +0.5 14,393 + GFF1713 0.86 +0.4 14,403 - GFF1713 0.87 -0.0
Or see this region's nucleotide sequence