Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1669 and GFF1670 are separated by 10 nucleotides GFF1670 and GFF1671 overlap by 4 nucleotides GFF1671 and GFF1672 are separated by 124 nucleotides GFF1672 and GFF1673 are separated by 2 nucleotides
GFF1669 - Signal transduction histidine kinase CheA (EC 2.7.3.-), at 53,599 to 55,608
GFF1669
GFF1670 - Flagellar motor rotation protein MotB, at 55,619 to 56,548
GFF1670
GFF1671 - Flagellar motor rotation protein MotA, at 56,545 to 57,432
GFF1671
GFF1672 - Flagellar transcriptional activator FlhC, at 57,557 to 58,135
GFF1672
GFF1673 - Flagellar transcriptional activator FlhD, at 58,138 to 58,479
GFF1673
Position (kb) 56
57
58 Strain fitness (log2 ratio) -2
-1
0
1 at 55.599 kb on + strand at 55.600 kb on - strand at 55.683 kb on - strand at 55.683 kb on - strand at 55.692 kb on - strand at 55.751 kb on + strand, within GFF1670 at 55.768 kb on + strand, within GFF1670 at 55.768 kb on + strand, within GFF1670 at 55.839 kb on - strand, within GFF1670 at 55.922 kb on - strand, within GFF1670 at 55.988 kb on + strand, within GFF1670 at 55.989 kb on - strand, within GFF1670 at 55.989 kb on - strand, within GFF1670 at 56.032 kb on + strand, within GFF1670 at 56.278 kb on - strand, within GFF1670 at 56.614 kb on - strand at 56.809 kb on - strand, within GFF1671 at 56.813 kb on - strand, within GFF1671 at 56.813 kb on - strand, within GFF1671 at 56.813 kb on - strand, within GFF1671 at 57.016 kb on - strand, within GFF1671 at 57.210 kb on - strand, within GFF1671 at 57.210 kb on - strand, within GFF1671 at 57.213 kb on + strand, within GFF1671 at 57.214 kb on - strand, within GFF1671 at 57.347 kb on + strand at 57.426 kb on + strand at 57.427 kb on - strand at 57.457 kb on - strand at 57.635 kb on + strand, within GFF1672 at 57.635 kb on + strand, within GFF1672 at 57.725 kb on - strand, within GFF1672 at 57.831 kb on + strand, within GFF1672 at 57.944 kb on - strand, within GFF1672 at 58.136 kb on + strand at 58.136 kb on + strand at 58.200 kb on + strand, within GFF1673 at 58.219 kb on + strand, within GFF1673
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 55,599 + -2.2 55,600 - -0.3 55,683 - -0.1 55,683 - +0.1 55,692 - +0.3 55,751 + GFF1670 0.14 -0.8 55,768 + GFF1670 0.16 +0.4 55,768 + GFF1670 0.16 -0.0 55,839 - GFF1670 0.24 +0.6 55,922 - GFF1670 0.33 +0.8 55,988 + GFF1670 0.40 -0.1 55,989 - GFF1670 0.40 +1.3 55,989 - GFF1670 0.40 +0.4 56,032 + GFF1670 0.44 +0.5 56,278 - GFF1670 0.71 +0.1 56,614 - +0.2 56,809 - GFF1671 0.30 +0.1 56,813 - GFF1671 0.30 +0.3 56,813 - GFF1671 0.30 +1.2 56,813 - GFF1671 0.30 +0.5 57,016 - GFF1671 0.53 +0.5 57,210 - GFF1671 0.75 -0.5 57,210 - GFF1671 0.75 +0.4 57,213 + GFF1671 0.75 +1.2 57,214 - GFF1671 0.75 +1.0 57,347 + +0.5 57,426 + -0.1 57,427 - +1.1 57,457 - +0.7 57,635 + GFF1672 0.13 +0.1 57,635 + GFF1672 0.13 +0.2 57,725 - GFF1672 0.29 +0.0 57,831 + GFF1672 0.47 +0.1 57,944 - GFF1672 0.67 -0.4 58,136 + +0.3 58,136 + +0.2 58,200 + GFF1673 0.18 +0.2 58,219 + GFF1673 0.24 +0.1
Or see this region's nucleotide sequence