Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1664

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
48,203	-		GFF1662	0.24	+1.1
48,312	+		GFF1662	0.41	+0.8
48,627	+		GFF1662	0.90	+0.0
48,778	-		GFF1663	0.19	-0.2
48,935	-		GFF1663	0.59	-0.5
49,094	-				+0.4
49,117	-				-0.5
49,162	+				-0.4
49,201	-				+0.6
49,278	-		GFF1664	0.16	-0.9
49,485	-		GFF1664	0.36	-0.2
49,591	-		GFF1664	0.46	-0.5
49,815	+		GFF1664	0.67	-0.3
49,815	+		GFF1664	0.67	-0.3
49,816	-		GFF1664	0.67	-0.5
50,006	-		GFF1664	0.85	+0.2
50,172	-				+1.2
50,186	-				+0.3
50,482	-		GFF1665	0.37	-0.5
50,521	+		GFF1665	0.42	-0.0
50,526	-		GFF1665	0.43	-0.3
50,633	-		GFF1665	0.55	-0.2
50,768	+		GFF1665	0.70	-0.1
50,920	+		GFF1665	0.88	-0.0
50,926	-		GFF1665	0.89	-1.3
51,024	-				+0.1
51,035	-				+0.1
51,050	-				+0.2
51,050	-				-0.0
51,108	-				+0.1
51,150	+				-0.2