Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1593

Experiment: Acanthamoeba sp., muxed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1592 and GFF1593 are separated by 16 nucleotidesGFF1593 and GFF1594 are separated by 48 nucleotides GFF1592 - Multidrug resistance protein A, at 49,960 to 51,132 GFF1592 GFF1593 - Multidrug resistance protein B, at 51,149 to 52,687 GFF1593 GFF1594 - Putative glycoporin, at 52,736 to 54,106 GFF1594 Position (kb) 51 52 53Strain fitness (log2 ratio) -1 0 1at 50.410 kb on - strand, within GFF1592at 50.500 kb on + strand, within GFF1592at 50.501 kb on - strand, within GFF1592at 50.633 kb on - strand, within GFF1592at 50.755 kb on - strand, within GFF1592at 50.784 kb on + strand, within GFF1592at 50.790 kb on + strand, within GFF1592at 50.795 kb on - strand, within GFF1592at 50.807 kb on + strand, within GFF1592at 50.807 kb on + strand, within GFF1592at 51.219 kb on - strandat 51.535 kb on + strand, within GFF1593at 51.539 kb on + strand, within GFF1593at 51.626 kb on + strand, within GFF1593at 51.748 kb on + strand, within GFF1593at 51.749 kb on - strand, within GFF1593at 51.749 kb on - strand, within GFF1593at 51.922 kb on + strand, within GFF1593at 51.989 kb on + strand, within GFF1593at 51.990 kb on - strand, within GFF1593at 51.991 kb on + strand, within GFF1593at 51.991 kb on + strand, within GFF1593at 51.998 kb on + strand, within GFF1593at 52.044 kb on - strand, within GFF1593at 52.093 kb on + strand, within GFF1593at 52.144 kb on + strand, within GFF1593at 52.174 kb on + strand, within GFF1593at 52.175 kb on - strand, within GFF1593at 52.179 kb on - strand, within GFF1593at 52.255 kb on + strand, within GFF1593at 52.303 kb on + strand, within GFF1593at 52.405 kb on + strand, within GFF1593at 52.405 kb on + strand, within GFF1593at 52.405 kb on + strand, within GFF1593at 52.405 kb on + strand, within GFF1593at 52.405 kb on + strand, within GFF1593at 52.405 kb on + strand, within GFF1593at 52.484 kb on - strand, within GFF1593at 52.488 kb on - strand, within GFF1593at 52.488 kb on - strand, within GFF1593at 52.685 kb on + strandat 52.690 kb on - strandat 52.828 kb on - strandat 52.895 kb on - strand, within GFF1594at 52.999 kb on + strand, within GFF1594at 52.999 kb on + strand, within GFF1594at 53.000 kb on - strand, within GFF1594at 53.000 kb on - strand, within GFF1594at 53.001 kb on + strand, within GFF1594at 53.002 kb on - strand, within GFF1594at 53.002 kb on - strand, within GFF1594at 53.074 kb on - strand, within GFF1594at 53.148 kb on + strand, within GFF1594at 53.194 kb on - strand, within GFF1594at 53.303 kb on + strand, within GFF1594at 53.332 kb on + strand, within GFF1594at 53.333 kb on - strand, within GFF1594at 53.334 kb on + strand, within GFF1594at 53.335 kb on - strand, within GFF1594at 53.335 kb on - strand, within GFF1594at 53.336 kb on + strand, within GFF1594at 53.337 kb on - strand, within GFF1594at 53.337 kb on - strand, within GFF1594at 53.425 kb on + strand, within GFF1594at 53.450 kb on - strand, within GFF1594at 53.452 kb on - strand, within GFF1594at 53.452 kb on - strand, within GFF1594at 53.452 kb on - strand, within GFF1594at 53.452 kb on - strand, within GFF1594at 53.456 kb on - strand, within GFF1594at 53.457 kb on + strand, within GFF1594

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1
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50,410 - GFF1592 0.38 +0.3
50,500 + GFF1592 0.46 -0.1
50,501 - GFF1592 0.46 +0.3
50,633 - GFF1592 0.57 -1.0
50,755 - GFF1592 0.68 +0.2
50,784 + GFF1592 0.70 +1.5
50,790 + GFF1592 0.71 -0.1
50,795 - GFF1592 0.71 -0.2
50,807 + GFF1592 0.72 +0.7
50,807 + GFF1592 0.72 +0.1
51,219 - -0.4
51,535 + GFF1593 0.25 +0.5
51,539 + GFF1593 0.25 +0.1
51,626 + GFF1593 0.31 +0.2
51,748 + GFF1593 0.39 -0.2
51,749 - GFF1593 0.39 -0.2
51,749 - GFF1593 0.39 +0.5
51,922 + GFF1593 0.50 +0.4
51,989 + GFF1593 0.55 -0.9
51,990 - GFF1593 0.55 -0.1
51,991 + GFF1593 0.55 +0.9
51,991 + GFF1593 0.55 -1.6
51,998 + GFF1593 0.55 +0.5
52,044 - GFF1593 0.58 -0.7
52,093 + GFF1593 0.61 -1.1
52,144 + GFF1593 0.65 +0.3
52,174 + GFF1593 0.67 -0.2
52,175 - GFF1593 0.67 +0.1
52,179 - GFF1593 0.67 +0.4
52,255 + GFF1593 0.72 -0.0
52,303 + GFF1593 0.75 -0.6
52,405 + GFF1593 0.82 -0.4
52,405 + GFF1593 0.82 -0.4
52,405 + GFF1593 0.82 -0.1
52,405 + GFF1593 0.82 -0.2
52,405 + GFF1593 0.82 +0.7
52,405 + GFF1593 0.82 -0.6
52,484 - GFF1593 0.87 -0.5
52,488 - GFF1593 0.87 -0.2
52,488 - GFF1593 0.87 -1.0
52,685 + +0.6
52,690 - +0.3
52,828 - -0.3
52,895 - GFF1594 0.12 -0.1
52,999 + GFF1594 0.19 -0.9
52,999 + GFF1594 0.19 -0.2
53,000 - GFF1594 0.19 +0.9
53,000 - GFF1594 0.19 +0.2
53,001 + GFF1594 0.19 -0.9
53,002 - GFF1594 0.19 +0.1
53,002 - GFF1594 0.19 -0.2
53,074 - GFF1594 0.25 -0.7
53,148 + GFF1594 0.30 +0.2
53,194 - GFF1594 0.33 +0.3
53,303 + GFF1594 0.41 -0.1
53,332 + GFF1594 0.43 -0.0
53,333 - GFF1594 0.44 +0.8
53,334 + GFF1594 0.44 -0.2
53,335 - GFF1594 0.44 +0.4
53,335 - GFF1594 0.44 -0.2
53,336 + GFF1594 0.44 +0.2
53,337 - GFF1594 0.44 +0.7
53,337 - GFF1594 0.44 -0.1
53,425 + GFF1594 0.50 +0.2
53,450 - GFF1594 0.52 +0.3
53,452 - GFF1594 0.52 -0.2
53,452 - GFF1594 0.52 +0.9
53,452 - GFF1594 0.52 +0.7
53,452 - GFF1594 0.52 -1.7
53,456 - GFF1594 0.53 -0.0
53,457 + GFF1594 0.53 +0.4

Or see this region's nucleotide sequence