Experiment: Acanthamoeba sp., muxed culture-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1576 and GFF1577 are separated by 214 nucleotides GFF1577 and GFF1578 are separated by 34 nucleotides GFF1578 and GFF1579 are separated by 161 nucleotides GFF1579 and GFF1580 are separated by 83 nucleotides
GFF1576 - hypothetical protein, at 36,179 to 36,292
GFF1576
GFF1577 - Putative inner membrane protein, at 36,507 to 36,956
GFF1577
GFF1578 - FIG01219827: hypothetical protein, at 36,991 to 37,341
GFF1578
GFF1579 - FIG00638140: hypothetical protein, at 37,503 to 37,829
GFF1579
GFF1580 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 37,913 to 39,247
GFF1580
Position (kb) 36
37
38 Strain fitness (log2 ratio) -1
0
1
2 at 36.009 kb on - strand at 36.031 kb on + strand at 36.147 kb on - strand at 36.151 kb on + strand at 36.174 kb on + strand at 36.217 kb on + strand, within GFF1576 at 36.422 kb on + strand at 36.448 kb on + strand at 36.503 kb on + strand at 36.795 kb on - strand, within GFF1577 at 36.797 kb on + strand, within GFF1577 at 37.101 kb on - strand, within GFF1578 at 37.167 kb on + strand, within GFF1578 at 37.168 kb on - strand, within GFF1578 at 37.239 kb on - strand, within GFF1578 at 37.239 kb on - strand, within GFF1578 at 37.262 kb on + strand, within GFF1578 at 37.262 kb on + strand, within GFF1578 at 37.374 kb on - strand at 37.466 kb on + strand at 37.478 kb on + strand at 37.502 kb on + strand at 37.646 kb on + strand, within GFF1579 at 37.646 kb on + strand, within GFF1579 at 37.695 kb on - strand, within GFF1579 at 37.855 kb on + strand at 37.855 kb on + strand at 37.856 kb on - strand at 37.969 kb on + strand at 38.030 kb on + strand at 38.188 kb on - strand, within GFF1580 at 38.188 kb on - strand, within GFF1580 at 38.270 kb on + strand, within GFF1580 at 38.276 kb on - strand, within GFF1580
Per-strain Table
Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1 remove 36,009 - -0.2 36,031 + +0.0 36,147 - -0.1 36,151 + +0.4 36,174 + -0.4 36,217 + GFF1576 0.33 -0.0 36,422 + -0.3 36,448 + +0.9 36,503 + +0.1 36,795 - GFF1577 0.64 +0.5 36,797 + GFF1577 0.64 -0.5 37,101 - GFF1578 0.31 +0.7 37,167 + GFF1578 0.50 -0.1 37,168 - GFF1578 0.50 +0.4 37,239 - GFF1578 0.71 +0.2 37,239 - GFF1578 0.71 -0.2 37,262 + GFF1578 0.77 +0.3 37,262 + GFF1578 0.77 -0.0 37,374 - +0.1 37,466 + -0.3 37,478 + +0.4 37,502 + +0.5 37,646 + GFF1579 0.44 +1.1 37,646 + GFF1579 0.44 +0.4 37,695 - GFF1579 0.59 -0.2 37,855 + +0.8 37,855 + -0.4 37,856 - -1.0 37,969 + -0.3 38,030 + +2.2 38,188 - GFF1580 0.21 -0.1 38,188 - GFF1580 0.21 -0.3 38,270 + GFF1580 0.27 +0.6 38,276 - GFF1580 0.27 -0.0
Or see this region's nucleotide sequence