Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1535

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
39,438	+		GFF1534	0.71	+1.3
39,439	-		GFF1534	0.71	+0.6
39,439	-		GFF1534	0.71	+0.2
39,439	-		GFF1534	0.71	+0.0
39,476	-		GFF1534	0.74	+1.2
39,522	+		GFF1534	0.77	+0.0
39,536	-		GFF1534	0.77	-0.1
39,589	+		GFF1534	0.81	-0.3
39,590	-		GFF1534	0.81	+0.3
40,102	-				-0.1
40,245	+				-0.1
40,360	+				-0.8
40,430	+				+0.1
40,592	-		GFF1535	0.22	+0.4
40,809	-		GFF1535	0.51	-1.0
40,862	+		GFF1535	0.57	+0.3
40,863	-		GFF1535	0.58	-0.7
40,863	-		GFF1535	0.58	-0.2
41,022	-		GFF1535	0.78	+0.1
41,137	+				-0.0
41,243	+				+0.9
41,244	-				-0.1
41,244	-				+0.3
41,416	-		GFF1536	0.23	-0.3
41,416	-		GFF1536	0.23	-0.1
41,458	-		GFF1536	0.27	-1.5
41,496	+		GFF1536	0.32	-0.3
41,497	-		GFF1536	0.32	-0.6
41,656	+		GFF1536	0.49	-0.9
41,657	-		GFF1536	0.50	+0.1
41,660	-		GFF1536	0.50	+0.3
41,931	+		GFF1536	0.80	+0.5
41,932	-		GFF1536	0.80	+0.5
41,956	-		GFF1536	0.83	-0.1
42,067	+				+0.1