Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1469

Experiment: Acanthamoeba sp., muxed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1468 and GFF1469 are separated by 0 nucleotidesGFF1469 and GFF1470 overlap by 4 nucleotides GFF1468 - Sensor protein basS/pmrB (EC 2.7.3.-), at 132,770 to 133,849 GFF1468 GFF1469 - Transcriptional regulatory protein basR/pmrA, at 133,850 to 134,518 GFF1469 GFF1470 - Phosphoethanolamine transferase EptA specific for the 1 phosphate group of core-lipid A, at 134,515 to 136,158 GFF1470 Position (kb) 133 134 135Strain fitness (log2 ratio) -2 -1 0 1at 132.930 kb on - strand, within GFF1468at 132.930 kb on - strand, within GFF1468at 133.038 kb on + strand, within GFF1468at 133.038 kb on + strand, within GFF1468at 133.039 kb on - strand, within GFF1468at 133.083 kb on - strand, within GFF1468at 133.083 kb on - strand, within GFF1468at 133.176 kb on + strand, within GFF1468at 133.176 kb on + strand, within GFF1468at 133.177 kb on - strand, within GFF1468at 133.219 kb on - strand, within GFF1468at 133.340 kb on + strand, within GFF1468at 133.379 kb on + strand, within GFF1468at 133.517 kb on - strand, within GFF1468at 133.615 kb on + strand, within GFF1468at 133.616 kb on - strand, within GFF1468at 133.669 kb on + strand, within GFF1468at 133.754 kb on - strandat 133.754 kb on - strandat 133.780 kb on + strandat 133.851 kb on + strandat 133.878 kb on + strandat 133.933 kb on + strand, within GFF1469at 133.933 kb on + strand, within GFF1469at 133.937 kb on + strand, within GFF1469at 133.937 kb on + strand, within GFF1469at 133.938 kb on - strand, within GFF1469at 133.938 kb on - strand, within GFF1469at 133.938 kb on - strand, within GFF1469at 133.939 kb on + strand, within GFF1469at 133.939 kb on + strand, within GFF1469at 133.940 kb on - strand, within GFF1469at 133.984 kb on - strand, within GFF1469at 133.984 kb on - strand, within GFF1469at 133.993 kb on + strand, within GFF1469at 133.994 kb on - strand, within GFF1469at 133.995 kb on + strand, within GFF1469at 134.056 kb on - strand, within GFF1469at 134.111 kb on + strand, within GFF1469at 134.112 kb on - strand, within GFF1469at 134.114 kb on - strand, within GFF1469at 134.114 kb on - strand, within GFF1469at 134.162 kb on - strand, within GFF1469at 134.307 kb on + strand, within GFF1469at 134.404 kb on + strand, within GFF1469at 134.469 kb on - strandat 134.483 kb on + strandat 134.484 kb on - strandat 134.567 kb on + strandat 134.568 kb on - strandat 134.579 kb on - strandat 134.673 kb on - strandat 134.805 kb on - strand, within GFF1470at 134.866 kb on + strand, within GFF1470at 134.868 kb on + strand, within GFF1470at 134.869 kb on - strand, within GFF1470at 134.871 kb on - strand, within GFF1470at 134.871 kb on - strand, within GFF1470at 134.871 kb on - strand, within GFF1470at 134.892 kb on + strand, within GFF1470at 134.897 kb on + strand, within GFF1470at 134.898 kb on - strand, within GFF1470at 134.990 kb on + strand, within GFF1470at 134.990 kb on + strand, within GFF1470at 134.990 kb on + strand, within GFF1470at 135.019 kb on - strand, within GFF1470at 135.019 kb on - strand, within GFF1470at 135.023 kb on - strand, within GFF1470at 135.057 kb on + strand, within GFF1470at 135.058 kb on - strand, within GFF1470at 135.059 kb on + strand, within GFF1470at 135.109 kb on - strand, within GFF1470at 135.128 kb on - strand, within GFF1470at 135.199 kb on + strand, within GFF1470at 135.225 kb on + strand, within GFF1470at 135.226 kb on - strand, within GFF1470at 135.266 kb on + strand, within GFF1470at 135.283 kb on - strand, within GFF1470at 135.348 kb on - strand, within GFF1470at 135.509 kb on - strand, within GFF1470

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1
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132,930 - GFF1468 0.15 +0.1
132,930 - GFF1468 0.15 +0.9
133,038 + GFF1468 0.25 +0.5
133,038 + GFF1468 0.25 +0.1
133,039 - GFF1468 0.25 +0.1
133,083 - GFF1468 0.29 +0.0
133,083 - GFF1468 0.29 +0.4
133,176 + GFF1468 0.38 +0.1
133,176 + GFF1468 0.38 -0.1
133,177 - GFF1468 0.38 -0.2
133,219 - GFF1468 0.42 -1.6
133,340 + GFF1468 0.53 +0.2
133,379 + GFF1468 0.56 -0.1
133,517 - GFF1468 0.69 -0.8
133,615 + GFF1468 0.78 +0.7
133,616 - GFF1468 0.78 +0.3
133,669 + GFF1468 0.83 +1.0
133,754 - -0.5
133,754 - -0.1
133,780 + -0.1
133,851 + +0.2
133,878 + +0.2
133,933 + GFF1469 0.12 -0.0
133,933 + GFF1469 0.12 -0.3
133,937 + GFF1469 0.13 -0.1
133,937 + GFF1469 0.13 -0.7
133,938 - GFF1469 0.13 -0.1
133,938 - GFF1469 0.13 -0.4
133,938 - GFF1469 0.13 -0.1
133,939 + GFF1469 0.13 +0.8
133,939 + GFF1469 0.13 -0.6
133,940 - GFF1469 0.13 +0.4
133,984 - GFF1469 0.20 +0.2
133,984 - GFF1469 0.20 +0.0
133,993 + GFF1469 0.21 -1.2
133,994 - GFF1469 0.22 +0.1
133,995 + GFF1469 0.22 +0.6
134,056 - GFF1469 0.31 +0.5
134,111 + GFF1469 0.39 +0.4
134,112 - GFF1469 0.39 -2.2
134,114 - GFF1469 0.39 -0.2
134,114 - GFF1469 0.39 -0.3
134,162 - GFF1469 0.47 -0.5
134,307 + GFF1469 0.68 -0.3
134,404 + GFF1469 0.83 -0.3
134,469 - -0.8
134,483 + +0.5
134,484 - -0.2
134,567 + -0.1
134,568 - -1.0
134,579 - -0.8
134,673 - -0.6
134,805 - GFF1470 0.18 -0.1
134,866 + GFF1470 0.21 -0.3
134,868 + GFF1470 0.21 -0.6
134,869 - GFF1470 0.22 +0.4
134,871 - GFF1470 0.22 -0.1
134,871 - GFF1470 0.22 +0.1
134,871 - GFF1470 0.22 -1.7
134,892 + GFF1470 0.23 +0.3
134,897 + GFF1470 0.23 -0.2
134,898 - GFF1470 0.23 +0.9
134,990 + GFF1470 0.29 -0.4
134,990 + GFF1470 0.29 -0.6
134,990 + GFF1470 0.29 +0.6
135,019 - GFF1470 0.31 -0.3
135,019 - GFF1470 0.31 -0.2
135,023 - GFF1470 0.31 -0.5
135,057 + GFF1470 0.33 -0.1
135,058 - GFF1470 0.33 +0.3
135,059 + GFF1470 0.33 -0.0
135,109 - GFF1470 0.36 +0.1
135,128 - GFF1470 0.37 -0.1
135,199 + GFF1470 0.42 -0.8
135,225 + GFF1470 0.43 +0.1
135,226 - GFF1470 0.43 -0.1
135,266 + GFF1470 0.46 -2.2
135,283 - GFF1470 0.47 -0.0
135,348 - GFF1470 0.51 +0.9
135,509 - GFF1470 0.60 +0.3

Or see this region's nucleotide sequence