Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1457

Experiment: Acanthamoeba sp., muxed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1455 and GFF1456 overlap by 4 nucleotidesGFF1456 and GFF1457 overlap by 8 nucleotidesGFF1457 and GFF1458 overlap by 4 nucleotidesGFF1458 and GFF1459 are separated by 139 nucleotidesGFF1459 and GFF1460 are separated by 76 nucleotides GFF1455 - NrfC protein, at 118,346 to 119,017 GFF1455 GFF1456 - NrfD protein, at 119,014 to 119,970 GFF1456 GFF1457 - Cytochrome c heme lyase subunit CcmF, at 119,963 to 122,185 GFF1457 GFF1458 - Cytochrome c-type heme lyase subunit nrfG, nitrite reductase complex assembly, at 122,182 to 122,802 GFF1458 GFF1459 - hypothetical protein, at 122,942 to 123,070 GFF1459 GFF1460 - Glutamate-aspartate carrier protein, at 123,147 to 124,457 GFF1460 Position (kb) 119 120 121 122 123Strain fitness (log2 ratio) -1 0 1at 118.994 kb on - strandat 118.997 kb on + strandat 118.998 kb on - strandat 119.075 kb on - strandat 119.164 kb on - strand, within GFF1456at 119.164 kb on - strand, within GFF1456at 119.275 kb on + strand, within GFF1456at 119.323 kb on + strand, within GFF1456at 119.330 kb on + strand, within GFF1456at 119.330 kb on + strand, within GFF1456at 119.331 kb on - strand, within GFF1456at 119.466 kb on - strand, within GFF1456at 119.497 kb on + strand, within GFF1456at 119.545 kb on - strand, within GFF1456at 119.631 kb on + strand, within GFF1456at 119.632 kb on - strand, within GFF1456at 119.632 kb on - strand, within GFF1456at 119.663 kb on + strand, within GFF1456at 119.687 kb on + strand, within GFF1456at 119.687 kb on + strand, within GFF1456at 119.688 kb on - strand, within GFF1456at 119.688 kb on - strand, within GFF1456at 119.866 kb on - strand, within GFF1456at 120.155 kb on - strandat 120.377 kb on - strand, within GFF1457at 120.397 kb on + strand, within GFF1457at 120.398 kb on - strand, within GFF1457at 120.493 kb on - strand, within GFF1457at 120.669 kb on - strand, within GFF1457at 120.767 kb on + strand, within GFF1457at 120.767 kb on + strand, within GFF1457at 120.768 kb on - strand, within GFF1457at 120.925 kb on + strand, within GFF1457at 120.966 kb on - strand, within GFF1457at 121.104 kb on - strand, within GFF1457at 121.104 kb on - strand, within GFF1457at 121.189 kb on - strand, within GFF1457at 121.269 kb on + strand, within GFF1457at 121.270 kb on - strand, within GFF1457at 121.270 kb on - strand, within GFF1457at 121.270 kb on - strand, within GFF1457at 121.364 kb on + strand, within GFF1457at 121.365 kb on - strand, within GFF1457at 121.410 kb on - strand, within GFF1457at 121.410 kb on - strand, within GFF1457at 121.410 kb on - strand, within GFF1457at 121.410 kb on - strand, within GFF1457at 121.539 kb on + strand, within GFF1457at 121.599 kb on + strand, within GFF1457at 121.601 kb on + strand, within GFF1457at 121.601 kb on + strand, within GFF1457at 121.601 kb on + strand, within GFF1457at 121.602 kb on - strand, within GFF1457at 121.602 kb on - strand, within GFF1457at 121.804 kb on - strand, within GFF1457at 122.003 kb on - strandat 122.229 kb on - strandat 122.452 kb on + strand, within GFF1458at 122.452 kb on + strand, within GFF1458at 122.452 kb on + strand, within GFF1458at 122.577 kb on + strand, within GFF1458at 122.577 kb on + strand, within GFF1458at 122.577 kb on + strand, within GFF1458at 122.578 kb on - strand, within GFF1458at 122.578 kb on - strand, within GFF1458at 122.578 kb on - strand, within GFF1458at 122.607 kb on + strand, within GFF1458at 122.607 kb on + strand, within GFF1458at 122.607 kb on + strand, within GFF1458at 122.608 kb on - strand, within GFF1458at 123.028 kb on - strand, within GFF1459at 123.035 kb on - strand, within GFF1459at 123.088 kb on + strandat 123.089 kb on - strandat 123.092 kb on + strandat 123.093 kb on - strandat 123.093 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1
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118,994 - -0.1
118,997 + -0.4
118,998 - -0.5
119,075 - -0.3
119,164 - GFF1456 0.16 +0.1
119,164 - GFF1456 0.16 -0.3
119,275 + GFF1456 0.27 -0.1
119,323 + GFF1456 0.32 +0.6
119,330 + GFF1456 0.33 -0.3
119,330 + GFF1456 0.33 +1.6
119,331 - GFF1456 0.33 -0.9
119,466 - GFF1456 0.47 -0.1
119,497 + GFF1456 0.50 +0.3
119,545 - GFF1456 0.55 -0.0
119,631 + GFF1456 0.64 -0.3
119,632 - GFF1456 0.65 +0.1
119,632 - GFF1456 0.65 +1.1
119,663 + GFF1456 0.68 -0.1
119,687 + GFF1456 0.70 +0.3
119,687 + GFF1456 0.70 +0.3
119,688 - GFF1456 0.70 -0.2
119,688 - GFF1456 0.70 -0.6
119,866 - GFF1456 0.89 -0.0
120,155 - -0.3
120,377 - GFF1457 0.19 -0.3
120,397 + GFF1457 0.20 +0.2
120,398 - GFF1457 0.20 -0.0
120,493 - GFF1457 0.24 +1.6
120,669 - GFF1457 0.32 +0.3
120,767 + GFF1457 0.36 +0.5
120,767 + GFF1457 0.36 -0.9
120,768 - GFF1457 0.36 -0.1
120,925 + GFF1457 0.43 -1.3
120,966 - GFF1457 0.45 -0.4
121,104 - GFF1457 0.51 +0.1
121,104 - GFF1457 0.51 -0.4
121,189 - GFF1457 0.55 +0.5
121,269 + GFF1457 0.59 +1.2
121,270 - GFF1457 0.59 +0.3
121,270 - GFF1457 0.59 -0.0
121,270 - GFF1457 0.59 +0.6
121,364 + GFF1457 0.63 -1.0
121,365 - GFF1457 0.63 +0.2
121,410 - GFF1457 0.65 +0.5
121,410 - GFF1457 0.65 +0.1
121,410 - GFF1457 0.65 +0.6
121,410 - GFF1457 0.65 +0.1
121,539 + GFF1457 0.71 -0.4
121,599 + GFF1457 0.74 +0.2
121,601 + GFF1457 0.74 +0.2
121,601 + GFF1457 0.74 +0.1
121,601 + GFF1457 0.74 +0.3
121,602 - GFF1457 0.74 +0.1
121,602 - GFF1457 0.74 +0.2
121,804 - GFF1457 0.83 +0.1
122,003 - -0.2
122,229 - +0.1
122,452 + GFF1458 0.43 +0.0
122,452 + GFF1458 0.43 -0.2
122,452 + GFF1458 0.43 +0.3
122,577 + GFF1458 0.64 +0.2
122,577 + GFF1458 0.64 +0.5
122,577 + GFF1458 0.64 +0.2
122,578 - GFF1458 0.64 +0.2
122,578 - GFF1458 0.64 +0.3
122,578 - GFF1458 0.64 +0.3
122,607 + GFF1458 0.68 -0.3
122,607 + GFF1458 0.68 +0.2
122,607 + GFF1458 0.68 +1.3
122,608 - GFF1458 0.69 +0.0
123,028 - GFF1459 0.67 -0.9
123,035 - GFF1459 0.72 -0.1
123,088 + +0.8
123,089 - -0.5
123,092 + -0.1
123,093 - +1.1
123,093 - +0.3

Or see this region's nucleotide sequence