Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1454

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
116,881	-		GFF1453	0.45	+0.5
116,909	+		GFF1453	0.47	-0.4
116,955	+		GFF1453	0.50	+1.1
116,966	+		GFF1453	0.51	-1.0
117,137	+		GFF1453	0.63	+0.4
117,277	+		GFF1453	0.73	+0.1
117,278	-		GFF1453	0.73	-0.4
117,278	-		GFF1453	0.73	-0.1
117,408	-		GFF1453	0.82	-0.6
117,408	-		GFF1453	0.82	-0.0
117,474	-		GFF1453	0.86	-0.2
117,575	+				+0.2
117,576	-				+0.5
117,737	-				+1.1
117,766	+				+0.6
117,767	-				-0.9
117,771	-				-0.7
117,771	-				-0.0
117,782	+				+1.0
117,783	-				-0.1
117,803	-				-0.1
117,998	+		GFF1454	0.38	+0.4
118,093	-		GFF1454	0.55	-0.4
118,093	-		GFF1454	0.55	+0.4
118,095	-		GFF1454	0.55	+0.7
118,100	-		GFF1454	0.56	+0.2
118,121	+		GFF1454	0.60	+0.0
118,122	-		GFF1454	0.60	+0.5
118,122	-		GFF1454	0.60	+0.3
118,441	+		GFF1455	0.14	-0.5
118,559	-		GFF1455	0.32	-0.0
118,769	-		GFF1455	0.63	-0.6
118,795	+		GFF1455	0.67	+0.1
118,940	+		GFF1455	0.88	-0.1
118,994	-				-0.1
118,997	+				-0.4
118,998	-				-0.5
119,075	-				-0.3
119,164	-		GFF1456	0.16	+0.1
119,164	-		GFF1456	0.16	-0.3
119,275	+		GFF1456	0.27	-0.1
119,323	+		GFF1456	0.32	+0.6
119,330	+		GFF1456	0.33	-0.3
119,330	+		GFF1456	0.33	+1.6
119,331	-		GFF1456	0.33	-0.9