Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1363

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
15,559	-				+0.1
15,559	-				+1.6
15,583	-				+0.1
15,606	+				-0.6
15,640	+				-0.3
15,640	+				-1.4
15,640	+				+1.0
15,642	+				+0.6
15,806	+		GFF1362	0.23	+0.1
15,806	+		GFF1362	0.23	-0.2
15,948	-		GFF1362	0.39	+0.4
16,107	+		GFF1362	0.57	-0.2
16,180	-		GFF1362	0.66	+0.3
16,537	+		GFF1363	0.23	+0.9
16,601	+		GFF1363	0.47	+0.9
16,610	-		GFF1363	0.50	+0.9
17,107	-		GFF1364	0.28	-0.5
17,151	+		GFF1364	0.33	-0.1
17,152	-		GFF1364	0.33	+0.3
17,455	+		GFF1364	0.65	-0.1
17,456	-		GFF1364	0.65	-0.1
17,563	+		GFF1364	0.76	-0.0
17,661	+		GFF1364	0.87	+0.6
17,662	-		GFF1364	0.87	+0.0
17,720	+				-0.3
17,723	+				-0.1