Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1279

Experiment: Acanthamoeba sp., muxed culture-1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Acanthamoeba sp., muxed culture-1
4,923	+		GFF1277	0.64	-0.6
4,967	+		GFF1277	0.66	+0.8
5,063	+		GFF1277	0.71	+0.1
5,121	-		GFF1277	0.74	+0.1
5,253	-		GFF1277	0.81	+0.7
5,271	+		GFF1277	0.82	-0.2
5,609	+				+0.8
5,872	-				-0.5
5,999	+		GFF1279	0.14	-0.5
6,070	-		GFF1279	0.18	-1.6
6,088	-		GFF1279	0.20	-0.3
6,164	+		GFF1279	0.24	-0.7
6,411	+		GFF1279	0.39	-0.0
6,464	+		GFF1279	0.43	+0.5
6,464	+		GFF1279	0.43	+0.1
6,502	+		GFF1279	0.45	+0.2
6,507	-		GFF1279	0.45	-0.3
6,555	+		GFF1279	0.48	+0.5
6,588	-		GFF1279	0.50	+0.9
6,633	+		GFF1279	0.53	-0.6
6,633	+		GFF1279	0.53	-0.1
6,634	-		GFF1279	0.53	+0.2
6,699	-		GFF1279	0.57	-1.3
6,744	+		GFF1279	0.60	+0.1
6,747	+		GFF1279	0.60	-0.4
6,762	-		GFF1279	0.61	-1.2
6,876	+		GFF1279	0.68	+0.1
6,879	-		GFF1279	0.68	-0.2
6,903	+		GFF1279	0.70	-1.1
6,904	-		GFF1279	0.70	+0.1
6,939	+		GFF1279	0.72	+0.2
7,148	+		GFF1279	0.85	-0.5
7,212	-		GFF1279	0.89	+0.6
7,216	-		GFF1279	0.89	-0.8
7,390	-				-0.2
7,602	-		GFF1280	0.15	-0.1
7,623	-		GFF1280	0.16	-0.6
7,647	+		GFF1280	0.18	+0.8
7,810	+		GFF1280	0.29	-0.6
7,953	+		GFF1280	0.38	-0.1
8,001	+		GFF1280	0.41	-0.0
8,002	-		GFF1280	0.41	-0.1
8,005	+		GFF1280	0.42	-0.5
8,062	+		GFF1280	0.45	+0.8
8,063	-		GFF1280	0.46	+0.2
8,173	+		GFF1280	0.53	+0.4
8,174	-		GFF1280	0.53	-0.2
8,284	-		GFF1280	0.60	-0.2
8,284	-		GFF1280	0.60	+0.3