Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF100

Experiment: Acanthamoeba sp., muxed culture-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF99 and GFF100 are separated by 116 nucleotidesGFF100 and GFF101 overlap by 4 nucleotides GFF99 - Putative fimbriae, at 84,020 to 85,099 GFF99 GFF100 - ABC-type multidrug transport system, permease component, at 85,216 to 85,986 GFF100 GFF101 - ABC-type multidrug transport system, ATPase component, at 85,983 to 86,909 GFF101 Position (kb) 85 86Strain fitness (log2 ratio) -2 -1 0 1at 84.225 kb on - strand, within GFF99at 84.268 kb on + strand, within GFF99at 84.272 kb on + strand, within GFF99at 84.419 kb on + strand, within GFF99at 84.420 kb on - strand, within GFF99at 84.420 kb on - strand, within GFF99at 84.421 kb on + strand, within GFF99at 84.449 kb on - strand, within GFF99at 84.530 kb on + strand, within GFF99at 84.531 kb on - strand, within GFF99at 84.531 kb on - strand, within GFF99at 84.533 kb on - strand, within GFF99at 84.536 kb on - strand, within GFF99at 84.550 kb on - strand, within GFF99at 84.581 kb on - strand, within GFF99at 84.591 kb on - strand, within GFF99at 84.622 kb on + strand, within GFF99at 84.622 kb on + strand, within GFF99at 84.623 kb on - strand, within GFF99at 84.625 kb on + strand, within GFF99at 84.626 kb on - strand, within GFF99at 84.814 kb on + strand, within GFF99at 84.815 kb on - strand, within GFF99at 84.941 kb on - strand, within GFF99at 84.941 kb on - strand, within GFF99at 85.061 kb on + strandat 85.266 kb on - strandat 85.362 kb on - strand, within GFF100at 85.422 kb on - strand, within GFF100at 85.568 kb on - strand, within GFF100at 85.627 kb on + strand, within GFF100at 85.767 kb on + strand, within GFF100at 85.768 kb on - strand, within GFF100at 85.771 kb on - strand, within GFF100at 85.771 kb on - strand, within GFF100at 85.804 kb on - strand, within GFF100at 85.814 kb on + strand, within GFF100at 85.814 kb on + strand, within GFF100at 85.815 kb on - strand, within GFF100at 86.048 kb on + strandat 86.051 kb on + strandat 86.052 kb on - strandat 86.057 kb on + strandat 86.057 kb on + strandat 86.147 kb on + strand, within GFF101at 86.147 kb on + strand, within GFF101at 86.161 kb on + strand, within GFF101at 86.174 kb on + strand, within GFF101at 86.181 kb on - strand, within GFF101at 86.203 kb on - strand, within GFF101at 86.289 kb on - strand, within GFF101at 86.566 kb on - strand, within GFF101at 86.613 kb on + strand, within GFF101at 86.760 kb on - strand, within GFF101at 86.922 kb on - strandat 86.945 kb on + strandat 86.946 kb on - strandat 86.946 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Acanthamoeba sp., muxed culture-1
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84,225 - GFF99 0.19 +0.9
84,268 + GFF99 0.23 -0.0
84,272 + GFF99 0.23 +0.1
84,419 + GFF99 0.37 +0.7
84,420 - GFF99 0.37 +0.2
84,420 - GFF99 0.37 +0.7
84,421 + GFF99 0.37 +1.4
84,449 - GFF99 0.40 -0.6
84,530 + GFF99 0.47 -0.4
84,531 - GFF99 0.47 +0.5
84,531 - GFF99 0.47 +0.2
84,533 - GFF99 0.47 -0.0
84,536 - GFF99 0.48 +1.0
84,550 - GFF99 0.49 -0.4
84,581 - GFF99 0.52 -0.4
84,591 - GFF99 0.53 -0.3
84,622 + GFF99 0.56 +0.7
84,622 + GFF99 0.56 +0.8
84,623 - GFF99 0.56 +0.2
84,625 + GFF99 0.56 -0.2
84,626 - GFF99 0.56 +0.8
84,814 + GFF99 0.74 -0.3
84,815 - GFF99 0.74 -0.1
84,941 - GFF99 0.85 -1.0
84,941 - GFF99 0.85 +0.1
85,061 + -2.3
85,266 - +0.7
85,362 - GFF100 0.19 +0.4
85,422 - GFF100 0.27 -1.1
85,568 - GFF100 0.46 +0.1
85,627 + GFF100 0.53 +0.7
85,767 + GFF100 0.71 -0.3
85,768 - GFF100 0.72 +0.0
85,771 - GFF100 0.72 -1.7
85,771 - GFF100 0.72 +0.1
85,804 - GFF100 0.76 +0.0
85,814 + GFF100 0.78 +0.1
85,814 + GFF100 0.78 -0.6
85,815 - GFF100 0.78 +0.2
86,048 + +0.7
86,051 + +1.3
86,052 - +1.6
86,057 + -2.2
86,057 + +0.0
86,147 + GFF101 0.18 +0.0
86,147 + GFF101 0.18 +0.6
86,161 + GFF101 0.19 -0.9
86,174 + GFF101 0.21 -0.1
86,181 - GFF101 0.21 -0.2
86,203 - GFF101 0.24 +0.1
86,289 - GFF101 0.33 +0.1
86,566 - GFF101 0.63 -0.0
86,613 + GFF101 0.68 -0.0
86,760 - GFF101 0.84 +0.1
86,922 - +0.7
86,945 + -1.0
86,946 - -0.2
86,946 - -0.1

Or see this region's nucleotide sequence