Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF99

Experiment: C.elegans, mixed culture-2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF98 and GFF99 are separated by 8 nucleotidesGFF99 and GFF100 are separated by 116 nucleotidesGFF100 and GFF101 overlap by 4 nucleotides GFF98 - FIG100795: Fimbriae usher protein StiC, at 81,465 to 84,011 GFF98 GFF99 - Putative fimbriae, at 84,020 to 85,099 GFF99 GFF100 - ABC-type multidrug transport system, permease component, at 85,216 to 85,986 GFF100 GFF101 - ABC-type multidrug transport system, ATPase component, at 85,983 to 86,909 GFF101 Position (kb) 84 85 86Strain fitness (log2 ratio) -2 -1 0 1at 83.069 kb on + strand, within GFF98at 83.069 kb on + strand, within GFF98at 83.088 kb on + strand, within GFF98at 83.089 kb on - strand, within GFF98at 83.089 kb on - strand, within GFF98at 83.089 kb on - strand, within GFF98at 83.091 kb on - strand, within GFF98at 83.101 kb on - strand, within GFF98at 83.101 kb on - strand, within GFF98at 83.106 kb on + strand, within GFF98at 83.106 kb on + strand, within GFF98at 83.121 kb on + strand, within GFF98at 83.121 kb on + strand, within GFF98at 83.121 kb on + strand, within GFF98at 83.122 kb on - strand, within GFF98at 83.122 kb on - strand, within GFF98at 83.169 kb on + strand, within GFF98at 83.236 kb on + strand, within GFF98at 83.236 kb on + strand, within GFF98at 83.236 kb on + strand, within GFF98at 83.247 kb on + strand, within GFF98at 83.247 kb on + strand, within GFF98at 83.248 kb on - strand, within GFF98at 83.249 kb on + strand, within GFF98at 83.249 kb on + strand, within GFF98at 83.250 kb on - strand, within GFF98at 83.265 kb on - strand, within GFF98at 83.339 kb on - strand, within GFF98at 83.391 kb on + strand, within GFF98at 83.391 kb on + strand, within GFF98at 83.392 kb on - strand, within GFF98at 83.392 kb on - strand, within GFF98at 83.392 kb on - strand, within GFF98at 83.403 kb on + strand, within GFF98at 83.424 kb on + strand, within GFF98at 83.538 kb on - strand, within GFF98at 83.606 kb on + strand, within GFF98at 83.606 kb on + strand, within GFF98at 83.743 kb on - strand, within GFF98at 83.754 kb on - strand, within GFF98at 83.754 kb on - strand, within GFF98at 83.984 kb on - strandat 84.225 kb on - strand, within GFF99at 84.268 kb on + strand, within GFF99at 84.272 kb on + strand, within GFF99at 84.419 kb on + strand, within GFF99at 84.420 kb on - strand, within GFF99at 84.420 kb on - strand, within GFF99at 84.421 kb on + strand, within GFF99at 84.449 kb on - strand, within GFF99at 84.530 kb on + strand, within GFF99at 84.531 kb on - strand, within GFF99at 84.531 kb on - strand, within GFF99at 84.533 kb on - strand, within GFF99at 84.536 kb on - strand, within GFF99at 84.550 kb on - strand, within GFF99at 84.581 kb on - strand, within GFF99at 84.591 kb on - strand, within GFF99at 84.622 kb on + strand, within GFF99at 84.622 kb on + strand, within GFF99at 84.623 kb on - strand, within GFF99at 84.625 kb on + strand, within GFF99at 84.626 kb on - strand, within GFF99at 84.814 kb on + strand, within GFF99at 84.815 kb on - strand, within GFF99at 84.941 kb on - strand, within GFF99at 84.941 kb on - strand, within GFF99at 85.061 kb on + strandat 85.266 kb on - strandat 85.362 kb on - strand, within GFF100at 85.422 kb on - strand, within GFF100at 85.568 kb on - strand, within GFF100at 85.627 kb on + strand, within GFF100at 85.767 kb on + strand, within GFF100at 85.768 kb on - strand, within GFF100at 85.771 kb on - strand, within GFF100at 85.771 kb on - strand, within GFF100at 85.804 kb on - strand, within GFF100at 85.814 kb on + strand, within GFF100at 85.814 kb on + strand, within GFF100at 85.815 kb on - strand, within GFF100at 86.048 kb on + strandat 86.051 kb on + strandat 86.052 kb on - strandat 86.057 kb on + strandat 86.057 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
remove
83,069 + GFF98 0.63 +0.1
83,069 + GFF98 0.63 +0.4
83,088 + GFF98 0.64 +0.8
83,089 - GFF98 0.64 +0.4
83,089 - GFF98 0.64 -0.4
83,089 - GFF98 0.64 +0.4
83,091 - GFF98 0.64 -0.3
83,101 - GFF98 0.64 +0.1
83,101 - GFF98 0.64 +0.2
83,106 + GFF98 0.64 +0.1
83,106 + GFF98 0.64 -0.7
83,121 + GFF98 0.65 +1.3
83,121 + GFF98 0.65 +1.5
83,121 + GFF98 0.65 +0.8
83,122 - GFF98 0.65 -0.0
83,122 - GFF98 0.65 +0.8
83,169 + GFF98 0.67 -0.3
83,236 + GFF98 0.70 +0.3
83,236 + GFF98 0.70 -0.5
83,236 + GFF98 0.70 +0.1
83,247 + GFF98 0.70 -0.1
83,247 + GFF98 0.70 -0.1
83,248 - GFF98 0.70 -0.9
83,249 + GFF98 0.70 +0.3
83,249 + GFF98 0.70 +0.4
83,250 - GFF98 0.70 +0.0
83,265 - GFF98 0.71 -1.1
83,339 - GFF98 0.74 +0.3
83,391 + GFF98 0.76 -0.1
83,391 + GFF98 0.76 +0.2
83,392 - GFF98 0.76 +0.3
83,392 - GFF98 0.76 -1.2
83,392 - GFF98 0.76 +0.4
83,403 + GFF98 0.76 -0.1
83,424 + GFF98 0.77 -1.2
83,538 - GFF98 0.81 +0.4
83,606 + GFF98 0.84 +0.0
83,606 + GFF98 0.84 +0.0
83,743 - GFF98 0.89 +0.0
83,754 - GFF98 0.90 -0.1
83,754 - GFF98 0.90 -0.1
83,984 - +0.4
84,225 - GFF99 0.19 +0.8
84,268 + GFF99 0.23 -0.5
84,272 + GFF99 0.23 -0.0
84,419 + GFF99 0.37 +0.5
84,420 - GFF99 0.37 +0.0
84,420 - GFF99 0.37 -0.2
84,421 + GFF99 0.37 +0.8
84,449 - GFF99 0.40 +0.7
84,530 + GFF99 0.47 +0.0
84,531 - GFF99 0.47 +0.3
84,531 - GFF99 0.47 +0.3
84,533 - GFF99 0.47 -0.5
84,536 - GFF99 0.48 +0.0
84,550 - GFF99 0.49 +0.3
84,581 - GFF99 0.52 +0.1
84,591 - GFF99 0.53 -0.7
84,622 + GFF99 0.56 +0.6
84,622 + GFF99 0.56 -1.6
84,623 - GFF99 0.56 +0.1
84,625 + GFF99 0.56 +0.2
84,626 - GFF99 0.56 -1.9
84,814 + GFF99 0.74 +0.1
84,815 - GFF99 0.74 -0.7
84,941 - GFF99 0.85 -0.7
84,941 - GFF99 0.85 -0.2
85,061 + +1.3
85,266 - +0.5
85,362 - GFF100 0.19 -0.8
85,422 - GFF100 0.27 -0.3
85,568 - GFF100 0.46 -0.2
85,627 + GFF100 0.53 -0.2
85,767 + GFF100 0.71 -0.0
85,768 - GFF100 0.72 +0.3
85,771 - GFF100 0.72 -1.0
85,771 - GFF100 0.72 -1.2
85,804 - GFF100 0.76 -0.2
85,814 + GFF100 0.78 -0.1
85,814 + GFF100 0.78 -0.2
85,815 - GFF100 0.78 -0.3
86,048 + -0.2
86,051 + +1.0
86,052 - +0.8
86,057 + -0.1
86,057 + +0.2

Or see this region's nucleotide sequence