Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF962

Experiment: C.elegans, mixed culture-2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF961 and GFF962 overlap by 4 nucleotidesGFF962 and GFF963 overlap by 14 nucleotides GFF961 - putative cytoplasmic protein, at 142,124 to 144,727 GFF961 GFF962 - putative cytoplasmic protein, at 144,724 to 145,536 GFF962 GFF963 - putative ABC-type sugar/spermidine/putrescine transport system ATPase component, at 145,523 to 146,614 GFF963 Position (kb) 144 145 146Strain fitness (log2 ratio) -2 -1 0 1at 143.737 kb on + strand, within GFF961at 143.925 kb on + strand, within GFF961at 143.954 kb on - strand, within GFF961at 144.257 kb on + strand, within GFF961at 144.867 kb on + strand, within GFF962at 144.919 kb on - strand, within GFF962at 144.934 kb on + strand, within GFF962at 144.935 kb on - strand, within GFF962at 145.041 kb on + strand, within GFF962at 145.042 kb on - strand, within GFF962at 145.150 kb on + strand, within GFF962at 145.252 kb on + strand, within GFF962at 145.503 kb on + strandat 145.587 kb on + strandat 145.722 kb on - strand, within GFF963at 145.722 kb on - strand, within GFF963at 145.740 kb on - strand, within GFF963at 145.802 kb on + strand, within GFF963at 145.802 kb on + strand, within GFF963at 145.978 kb on + strand, within GFF963at 145.992 kb on + strand, within GFF963at 145.993 kb on - strand, within GFF963at 145.993 kb on - strand, within GFF963at 145.993 kb on - strand, within GFF963at 146.096 kb on - strand, within GFF963at 146.123 kb on + strand, within GFF963at 146.124 kb on - strand, within GFF963at 146.124 kb on - strand, within GFF963at 146.144 kb on - strand, within GFF963at 146.168 kb on - strand, within GFF963at 146.169 kb on + strand, within GFF963at 146.170 kb on - strand, within GFF963at 146.170 kb on - strand, within GFF963at 146.198 kb on - strand, within GFF963at 146.198 kb on - strand, within GFF963at 146.313 kb on - strand, within GFF963at 146.395 kb on - strand, within GFF963at 146.410 kb on + strand, within GFF963

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
remove
143,737 + GFF961 0.62 +0.2
143,925 + GFF961 0.69 +0.8
143,954 - GFF961 0.70 +0.3
144,257 + GFF961 0.82 -1.8
144,867 + GFF962 0.18 +0.4
144,919 - GFF962 0.24 +0.4
144,934 + GFF962 0.26 +0.2
144,935 - GFF962 0.26 +0.4
145,041 + GFF962 0.39 +0.9
145,042 - GFF962 0.39 -0.2
145,150 + GFF962 0.52 +0.5
145,252 + GFF962 0.65 +0.1
145,503 + -0.0
145,587 + -0.2
145,722 - GFF963 0.18 +0.9
145,722 - GFF963 0.18 -0.3
145,740 - GFF963 0.20 +0.3
145,802 + GFF963 0.26 +0.2
145,802 + GFF963 0.26 -0.3
145,978 + GFF963 0.42 -0.3
145,992 + GFF963 0.43 -0.0
145,993 - GFF963 0.43 +0.2
145,993 - GFF963 0.43 -0.9
145,993 - GFF963 0.43 +0.2
146,096 - GFF963 0.52 -0.3
146,123 + GFF963 0.55 +0.8
146,124 - GFF963 0.55 +0.4
146,124 - GFF963 0.55 +0.2
146,144 - GFF963 0.57 +0.0
146,168 - GFF963 0.59 +0.1
146,169 + GFF963 0.59 -1.1
146,170 - GFF963 0.59 +0.2
146,170 - GFF963 0.59 -0.0
146,198 - GFF963 0.62 -1.0
146,198 - GFF963 0.62 +0.0
146,313 - GFF963 0.72 -0.5
146,395 - GFF963 0.80 -0.2
146,410 + GFF963 0.81 +0.3

Or see this region's nucleotide sequence