Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF875

Experiment: C.elegans, mixed culture-2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF874 and GFF875 overlap by 4 nucleotidesGFF875 and GFF876 are separated by 56 nucleotidesGFF876 and GFF877 are separated by 53 nucleotides GFF874 - Uncharacterized protein YtfM precursor, at 49,402 to 51,135 GFF874 GFF875 - Uncharacterized protein YtfN, at 51,132 to 54,911 GFF875 GFF876 - UPF0131 protein YtfP, at 54,968 to 55,258 GFF876 GFF877 - Putative sugar transporter, at 55,312 to 56,520 GFF877 Position (kb) 51 52 53 54 55Strain fitness (log2 ratio) -1 0 1 2at 50.281 kb on + strand, within GFF874at 50.347 kb on - strand, within GFF874at 50.383 kb on + strand, within GFF874at 50.403 kb on + strand, within GFF874at 50.545 kb on - strand, within GFF874at 50.645 kb on - strand, within GFF874at 50.719 kb on + strand, within GFF874at 50.763 kb on - strand, within GFF874at 50.917 kb on + strand, within GFF874at 50.925 kb on + strand, within GFF874at 50.926 kb on - strand, within GFF874at 50.938 kb on - strand, within GFF874at 51.110 kb on - strandat 51.139 kb on + strandat 51.305 kb on - strandat 51.431 kb on + strandat 51.582 kb on - strand, within GFF875at 51.929 kb on + strand, within GFF875at 51.929 kb on + strand, within GFF875at 51.929 kb on + strand, within GFF875at 51.930 kb on - strand, within GFF875at 52.023 kb on - strand, within GFF875at 52.180 kb on + strand, within GFF875at 52.290 kb on + strand, within GFF875at 52.292 kb on + strand, within GFF875at 52.292 kb on + strand, within GFF875at 52.293 kb on - strand, within GFF875at 52.293 kb on - strand, within GFF875at 52.328 kb on + strand, within GFF875at 52.457 kb on + strand, within GFF875at 52.458 kb on - strand, within GFF875at 52.659 kb on + strand, within GFF875at 52.659 kb on + strand, within GFF875at 52.660 kb on - strand, within GFF875at 52.660 kb on - strand, within GFF875at 52.715 kb on + strand, within GFF875at 52.928 kb on + strand, within GFF875at 53.358 kb on - strand, within GFF875at 53.367 kb on - strand, within GFF875at 53.367 kb on - strand, within GFF875at 53.466 kb on - strand, within GFF875at 53.813 kb on + strand, within GFF875at 53.814 kb on - strand, within GFF875at 53.820 kb on - strand, within GFF875at 53.996 kb on + strand, within GFF875at 54.215 kb on + strand, within GFF875at 54.364 kb on - strand, within GFF875at 54.568 kb on - strandat 54.695 kb on - strandat 54.761 kb on - strandat 54.761 kb on - strandat 54.823 kb on + strandat 54.842 kb on + strandat 54.842 kb on + strandat 54.848 kb on - strandat 54.909 kb on + strandat 54.929 kb on + strandat 54.930 kb on - strandat 55.010 kb on + strand, within GFF876at 55.011 kb on - strand, within GFF876at 55.011 kb on - strand, within GFF876at 55.019 kb on + strand, within GFF876at 55.020 kb on - strand, within GFF876at 55.066 kb on - strand, within GFF876at 55.067 kb on + strand, within GFF876at 55.184 kb on + strand, within GFF876at 55.184 kb on + strand, within GFF876at 55.184 kb on + strand, within GFF876at 55.184 kb on + strand, within GFF876at 55.184 kb on + strand, within GFF876at 55.184 kb on + strand, within GFF876at 55.184 kb on + strand, within GFF876at 55.184 kb on + strand, within GFF876at 55.185 kb on - strand, within GFF876at 55.185 kb on - strand, within GFF876at 55.185 kb on - strand, within GFF876at 55.185 kb on - strand, within GFF876at 55.185 kb on - strand, within GFF876at 55.185 kb on - strand, within GFF876at 55.185 kb on - strand, within GFF876at 55.188 kb on + strand, within GFF876at 55.188 kb on + strand, within GFF876at 55.188 kb on + strand, within GFF876at 55.189 kb on - strand, within GFF876at 55.189 kb on - strand, within GFF876at 55.189 kb on - strand, within GFF876at 55.239 kb on + strandat 55.337 kb on - strandat 55.396 kb on - strandat 55.409 kb on + strandat 55.409 kb on + strandat 55.410 kb on - strandat 55.549 kb on - strand, within GFF877at 55.658 kb on - strand, within GFF877at 55.678 kb on - strand, within GFF877at 55.822 kb on - strand, within GFF877at 55.854 kb on - strand, within GFF877at 55.870 kb on + strand, within GFF877at 55.902 kb on + strand, within GFF877

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Per-strain Table

Position Strand Gene LocusTag Fraction C.elegans, mixed culture-2
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50,281 + GFF874 0.51 -0.3
50,347 - GFF874 0.54 +0.2
50,383 + GFF874 0.57 +0.6
50,403 + GFF874 0.58 +0.1
50,545 - GFF874 0.66 +0.3
50,645 - GFF874 0.72 +0.3
50,719 + GFF874 0.76 -0.0
50,763 - GFF874 0.78 -1.4
50,917 + GFF874 0.87 -0.1
50,925 + GFF874 0.88 -0.4
50,926 - GFF874 0.88 -0.0
50,938 - GFF874 0.89 -0.5
51,110 - -0.1
51,139 + +0.2
51,305 - -1.5
51,431 + -0.4
51,582 - GFF875 0.12 -0.2
51,929 + GFF875 0.21 -0.1
51,929 + GFF875 0.21 -0.2
51,929 + GFF875 0.21 -0.7
51,930 - GFF875 0.21 -0.6
52,023 - GFF875 0.24 -0.4
52,180 + GFF875 0.28 -1.1
52,290 + GFF875 0.31 +0.6
52,292 + GFF875 0.31 -0.2
52,292 + GFF875 0.31 -0.3
52,293 - GFF875 0.31 -0.7
52,293 - GFF875 0.31 -0.6
52,328 + GFF875 0.32 +0.5
52,457 + GFF875 0.35 -0.7
52,458 - GFF875 0.35 +0.0
52,659 + GFF875 0.40 +0.2
52,659 + GFF875 0.40 -1.2
52,660 - GFF875 0.40 +0.4
52,660 - GFF875 0.40 +0.1
52,715 + GFF875 0.42 -0.3
52,928 + GFF875 0.48 -0.2
53,358 - GFF875 0.59 -0.4
53,367 - GFF875 0.59 -0.6
53,367 - GFF875 0.59 -0.7
53,466 - GFF875 0.62 +0.6
53,813 + GFF875 0.71 +0.9
53,814 - GFF875 0.71 +1.9
53,820 - GFF875 0.71 -0.7
53,996 + GFF875 0.76 -0.1
54,215 + GFF875 0.82 +0.2
54,364 - GFF875 0.86 -0.3
54,568 - +0.3
54,695 - -1.0
54,761 - -0.7
54,761 - -1.4
54,823 + -0.1
54,842 + -0.2
54,842 + +0.1
54,848 - +0.2
54,909 + +0.3
54,929 + -0.1
54,930 - -0.1
55,010 + GFF876 0.14 +0.7
55,011 - GFF876 0.15 +0.2
55,011 - GFF876 0.15 -0.9
55,019 + GFF876 0.18 -0.6
55,020 - GFF876 0.18 -0.4
55,066 - GFF876 0.34 -0.2
55,067 + GFF876 0.34 +1.2
55,184 + GFF876 0.74 -0.4
55,184 + GFF876 0.74 +0.1
55,184 + GFF876 0.74 -0.5
55,184 + GFF876 0.74 -0.2
55,184 + GFF876 0.74 +0.0
55,184 + GFF876 0.74 -0.2
55,184 + GFF876 0.74 -0.7
55,184 + GFF876 0.74 +0.7
55,185 - GFF876 0.75 -0.0
55,185 - GFF876 0.75 -0.4
55,185 - GFF876 0.75 +0.1
55,185 - GFF876 0.75 +0.1
55,185 - GFF876 0.75 -1.5
55,185 - GFF876 0.75 -0.1
55,185 - GFF876 0.75 -0.9
55,188 + GFF876 0.76 -0.3
55,188 + GFF876 0.76 -0.1
55,188 + GFF876 0.76 -0.6
55,189 - GFF876 0.76 -0.8
55,189 - GFF876 0.76 -0.6
55,189 - GFF876 0.76 -0.2
55,239 + +0.4
55,337 - -0.6
55,396 - +0.6
55,409 + -0.0
55,409 + +0.2
55,410 - +0.3
55,549 - GFF877 0.20 -0.3
55,658 - GFF877 0.29 +0.6
55,678 - GFF877 0.30 -0.1
55,822 - GFF877 0.42 -0.0
55,854 - GFF877 0.45 +0.1
55,870 + GFF877 0.46 -0.0
55,902 + GFF877 0.49 +0.2

Or see this region's nucleotide sequence